Parental gene:

HSP90AB1, ENSFCAG00000009764

Aliases:None
Description:heat shock protein 90kDa alpha (cytosolic), class B member 1 [Source:HGNC Symbol;Acc:5258]
Organism:Cat (Felis catus)
Coordinates:B2:44929519..44936342(+)


>ENSFCAG00000009764
ATGCCTGAGGAAGTGCACCATGGAGAGGAGGAGGTGGAGACATTTGCCTTCCAGGCAGAAATTGCCCAACTCATGTCCCT
CATCATCAATACCTTTTATTCCAACAAGGAAATTTTCCTTCGGGAGTTGATCAGTAACGCTTCTGATGCCTTGGACAAGA
TTCGGTATGAGAGCCTGACAGACCCTTCCAAGCTGGACAGTGGTAAAGAGCTCAAAATTGACATCATCCCCAACCCCCAG
GAACGCACTCTGACTCTAGTGGACACAGGCATTGGCATGACCAAAGCCGATCTCATAAATAATTTGGGGACCATTGCCAA
GTCGGGCACTAAAGCATTCATGGAGGCTCTCCAGGCTGGTGCGGACATCTCCATGATTGGACAATTTGGTGTTGGCTTTT
ATTCTGCTTATCTGGTGGCAGAGAAAGTGGTTGTTATCACAAAGCACAACGATGATGAGCAGTATGCCTGGGAGTCTTCT
GCTGGGGGCTCCTTCACTGTACGTGCAGACCATGGTGAGCCCATTGGCCGGGGCACCAAAGTGATCCTCCATCTTAAAGA
AGACCAGACAGAATATTTAGAGGAGAGACGTGTCAAAGAAGTGGTGAAGAAGCACTCACAGTTCATAGGCTATCCCATCA
CTCTTTATCTGGAGAAGGAACGAGAGAAAGAAATCAGTGATGATGAGGCAGAGGAGGAGAAAGGTGAGAAAGAAGAGGAA
GATAAAGATGATGAGGAGAAGCCCAAGATTGAAGATGTGGGCTCAGATGAGGAGGATGATAGTGGGAAGGACAAGAAGAA
GAAAACAAAGAAGATTAAGGAGAAGTACATTGATCAGGAAGAACTGAACAAGACCAAGCCCATTTGGACCAGAAACCCTG
ACGACATCACCCAGGAGGAATATGGAGAGTTTTACAAGAGCCTTACGAATGACTGGGAAGACCACTTGGCAGTCAAGCAC
TTCTCTGTGGAAGGTCAGCTGGAATTCAGGGCATTGCTGTTCATCCCCCGTCGGGCTCCTTTTGACCTTTTTGAGAACAA
GAAGAAAAAGAACAACATTAAGCTCTATGTCCGCCGTGTGTTTATCATGGACAGCTGTGATGAGTTGATACCGGAGTATC
TCAATTTCATCCGTGGTGTGGTGGACTCTGAGGACTTGCCCCTAAACATCTCCCGAGAAATGCTCCAGCAGAGCAAAATC
TTGAAGGTCATTCGCAAAAACATCGTAAAGAAGTGCCTTGAGCTCTTCTCTGAACTGGCAGAAGACAAGGAGAACTATAA
GAAATTCTATGAGGCATTTTCTAAAAACCTGAAGCTTGGAATCCATGAGGACTCCACTAATCGGCGCCGTCTTTCTGAGC
TGCTGCGTTATCACACCTCCCAGTCTGGAGATGAGATGACTTCCCTTTCGGAGTATGTCTCTCGCATGAAGGAGACCCAG
AAGTCCATCTATTACATCACTGGCGAGAGCAAAGAGCAGGTTGCCAACTCCGCTTTTGTGGAGCGGGTGCGGAAGCGGGG
CTTCGAGGTAGTGTATATGACTGAGCCTATCGATGAGTACTGCGTGCAGCAGCTCAAGGAGTTTGATGGGAAGAGTCTCG
TCTCCGTTACCAAGGAGGGCCTGGAGCTACCTGAGGATGAAGAGGAGAAAAAGAAAATGGAAGAGAGCAAGGCCAAGTTT
GAGAACCTCTGCAAACTTATGAAAGAAATACTGGACAAGAAGGTTGAGAAGGTGACCATCTCAAACAGGCTAGTGTCTTC
ACCCTGCTGCATTGTGACGAGCACCTACGGCTGGACGGCCAACATGGAGCGGATCATGAAAGCCCAGGCACTTCGGGACA
ACTCTACAATGGGTTATATGATGGCCAAAAAGCACCTGGAGATTAATCCTGACCACCCCATTGTGGAGACACTACGGCAG
AAGGCAGAGGCGGACAAGAATGACAAGGCTGTCAAGGACCTGGTGGTGCTCCTGTTTGAAACTGCACTGCTCTCTTCTGG
CTTCTCACTGGAGGATCCCCAGACCCACTCCAACCGAATTTACCGCATGATCAAGCTAGGCCTGGGTATTGACGAAGACG
AAGTAACTGCAGAGGAACCCAGTGCTGCTGTTCCTGATGAGATCCCTCCCCTTGAGGGTGATGAGGATGCATCCCGCATG
GAAGAAGTAGATTAG

Library Parental gene expression (RPM)
SRP017611_liver 45 .69 RPM
SRP017611_kidney 46 .27 RPM
SRP017611_brain 71 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001981 ortholog_one2one 4 retrogenes
retro_cfam_1108, retro_cfam_411, retro_cfam_562, retro_cfam_881,
Gorilla gorilla ENSGGOG00000008889 possible_ortholog 2 retrogenes
retro_ggor_1011, retro_ggor_701,
Macropus eugenii ENSMEUG00000013735 possible_ortholog 1 retrogene
retro_meug_1896,
Myotis lucifugus ENSMLUG00000005239 ortholog_one2one 2 retrogenes
retro_mluc_1604, retro_mluc_865,
Macaca mulatta ENSMMUG00000022686 possible_ortholog 2 retrogenes
retro_mmul_1319, retro_mmul_1869,
Mus musculus ENSMUSG00000023944 ortholog_one2one 3 retrogenes
retro_mmus_1916, retro_mmus_3528, retro_mmus_856,
Otolemur garnettii ENSOGAG00000011961 possible_ortholog 1 retrogene
retro_ogar_2574,
Pongo abelii ENSPPYG00000016655 possible_ortholog 2 retrogenes
retro_pabe_2425, retro_pabe_415,
Rattus norvegicus ENSRNOG00000019834 possible_ortholog 6 retrogenes
retro_rnor_1561, retro_rnor_1562, retro_rnor_1787, retro_rnor_597, retro_rnor_598, retro_rnor_87,
Tupaia belangeri ENSTBEG00000014873 possible_ortholog 1 retrogene
retro_tbel_1428,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_1177 71.14 59.94
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Download FASTA sequences of all ENSFCAG00000009764 retrocopies