Parental gene:

MMU.142, ENSMMUG00000022686

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:4:44167124..44173590(+)


>ENSMMUG00000022686
ATGCCTGAGGAAGTGCACCATGGAGAGGAGGAGGTGGAGACTTTTGCCTTTCAGGCAGAAATTGCCCAACTCATGTCCCT
CATCATCAATACCTTCTATTCCAACAAGGAGATTTTCCTTCGGGAGTTGATCTCTAATGCTTCTGATGCCTTGGACAAGA
TTCGCTATGAGAGCTTAACAGACCCTTCGAAGTTGGACAGTGGTAAAGAGCTGAAAATTGACATCATCCCCAACCCTCAG
GAACGTACCCTGACTTTGGTAGACACAGGCATTGGGATGACCAAAGCTGATCTCATAAATAATTTGGGAACCATTGCCAA
GTCTGGTACTAAAGCATTTATGGAGGCTCTTCAGGCTGGTGCAGACATCTCCATGATTGGACAGTTTGGTGTTGGCTTTT
ATTCTGCCTACCTGGTGGCAGAGAAAGTGGTTGTGATCACAAAGCACAACGATGATGAACAGTATGCTTGGGAGTCTTCT
GCTGGAGGTTCCTTCACTGTGCGGGCTGACCATGGTGAGCCCATTGGCAGAGGTACCAAAGTGATCCTCCATCTTAAAGA
AGATCAGACAGAGTACTTGGAAGAGAGGCGGGTCAAAGAAGTAGTGAAGAAGCACTCTCAGTTCATAGGCTATCCCATCA
CCCTTTATTTGGAGAAGGAGCGAGAGAAGGAAATTAGTGATGATGAGGCAGAGGAAGAGAAAGGTGAGAAAGAAGAGGAA
GATAAAGATGATGAAGAAAAGCCCAAGATCGAAGATGTGGGTTCAGATGAGGAGGATGACAGTGGTAAGGATAAGAAGAA
GAAAACTAAGAAGATCAAAGAGAAATACATTGATCAGGAAGAGCTAAACAAGACCAAGCCTATTTGGACCAGAAACCCTG
ATGACATCACCCAAGAGGAGTATGGAGAATTCTATAAGAGCCTCACCAATGACTGGGAAGACCACTTGGCAGTCAAGCAC
TTTTCTGTAGAAGGTCAGTTGGAATTCAGGGCATTGCTATTCATTCCTCGTCGGGCTCCCTTTGACCTTTTTGAGAACAA
GAAGAAAAAGAACAACATCAAACTCTATGTCCGTCGTGTGTTCATCATGGACAGCTGTGATGAGTTAATACCAGAGTATC
TCAATTTTATTCGTGGTGTGGTTGACTCTGAGGATCTGCCCCTGAACATCTCCCGAGAAATGCTCCAGCAGAGCAAAATC
TTGAAAGTCATTCGTAAAAACATTGTTAAGAAGTGTCTTGAGCTCTTCTCTGAGCTGGCAGAAGACAAGGAGAATTACAA
GAAATTCTATGAGGCATTCTCTAAAAATCTCAAGCTTGGAATCCACGAGGACTCCACTAACCGCCGCCGCCTGTCTGAGC
TGCTGCGCTATCACACCTCCCAGTCTGGAGATGAGATGACATCTCTGTCAGAGTATGTTTCTCGCATGAAGGAGACACAG
AAGTCCATCTATTACATCACTGGTGAGAGCAAAGAGCAGGTGGCCAACTCAGCTTTTGTGGAGCGAGTGCGGAAACGGGG
CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCTCAAGGAGTTTGATGGGAAGAGCCTGG
TCTCAGTTACCAAGGAGGGTCTGGAGCTGCCTGAGGATGAGGAGGAGAAGAAGAAGATGGAAGAGAGCAAGGCAAAGTTT
GAGAACCTTTGCAAGCTCATGAAAGAAATCTTAGATAAGAAGGTTGAGAAGGTGACAATTTCCAATAGGCTTGTGTCTTC
ACCCTGCTGCATTGTGACCAGCACCTATGGCTGGACAGCCAATATGGAGCGGATCATGAAAGCCCAGGCACTTCGGGACA
ACTCCACCATGGGCTATATGATGGCCAAAAAGCACCTGGAGATCAACCCTGACCACCCCATTGTGGAGACTCTGCGGCAG
AAGGCTGAGGCCGACAAGAATGATAAGGCAGTTAAGGACCTGGTGGTGCTGCTGTTTGAAACCGCCCTGCTCTCTTCAGG
CTTTTCCCTTGAGGATCCCCAGACCCACTCCAACCGCATCTACCGCATGATCAAGCTAGGTCTAGGTATTGATGAAGATG
AAGTGGCAGCAGAAGAACCCAGTGCTGCAGTTCCTGATGAGATTCCCTTGAGGGCGATGAGGATGCGTCTCGCATGGAAG
AAGTCGATTAGAGTTCATAGTTGGAAAACTTGTGCCCTTGTATAG

Library Parental gene expression (RPM)
SRP007412_brain 1230 .31 RPM
SRP007412_brain_prefrontal_cortex 1089 .76 RPM
SRP007412_cerebellum 787 .49 RPM
SRP007412_heart 930 .98 RPM
SRP007412_kidney 474 .76 RPM
SRP007412_liver 314 .65 RPM
SRP007412_testis 376 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001981 possible_ortholog 4 retrogenes
retro_cfam_1108, retro_cfam_411, retro_cfam_562, retro_cfam_881,
Felis catus ENSFCAG00000009764 possible_ortholog 1 retrogene
retro_fcat_1177,
Homo sapiens ENSG00000096384 ortholog_one2one 2 retrogenes
retro_hsap_2912, retro_hsap_2958,
Macropus eugenii ENSMEUG00000013735 ortholog_one2many 1 retrogene
retro_meug_1896,
Myotis lucifugus ENSMLUG00000005239 possible_ortholog 2 retrogenes
retro_mluc_1604, retro_mluc_865,
Macaca mulatta ENSMMUG00000011073 within_species_paralog 2 retrogenes
retro_mmul_1526, retro_mmul_2313,
Macaca mulatta ENSMMUG00000023469 within_species_paralog 1 retrogene
retro_mmul_391,
Mus musculus ENSMUSG00000023944 possible_ortholog 3 retrogenes
retro_mmus_1916, retro_mmus_3528, retro_mmus_856,
Rattus norvegicus ENSRNOG00000019834 ortholog_one2many 6 retrogenes
retro_rnor_1561, retro_rnor_1562, retro_rnor_1787, retro_rnor_597, retro_rnor_598, retro_rnor_87,
Tursiops truncatus ENSTTRG00000006924 ortholog_one2many 1 retrogene
retro_ttru_292,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1319 76.57 90.46
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2. retro_mmul_1869 83.08 70.98
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Download FASTA sequences of all ENSMMUG00000022686 retrocopies