Parental gene:

ENSFCAG00000024386

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:A3:724576..726460(-)


>ENSFCAG00000024386
ATGGCAGCCATCCCCTCCAGCGGCTCGCTCGTGGCCACCCACGACTATTACCGGCGCCGCCTGGGTTCCACTTCCAGTAA
CAGCTCCTGCGGAAGTGCGGAGTATCCTGGGGAAGCCATCCCTCACCACCCCGGTCTCCCCAAGGCTGACCCAGGTCACT
GGTGGGCAAGCTTCTTTTTCGGGAAGTCCACTCTCCCGTTCATGGCTACAGTGTTGGAGTCCCCAGAGCGCTCGGAATCT
CCCCAGGCGTCCAGCGGCTCCATCGCCTGCGACCTGGCTCTGGAAACCATGAGGAAGCAGCCTGGTGGCCAGCCTGGCAA
AGCCAACACCAGGCCCCAGTCCTGA

Library Parental gene expression (RPM)
SRP017611_brain 11 .71 RPM
SRP017611_kidney 102 .23 RPM
SRP017611_liver 59 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000031800 ortholog_many2many 7 retrogenes
retro_btau_1339, retro_btau_1538, retro_btau_1606, retro_btau_1817, retro_btau_1857, retro_btau_385, retro_btau_54,
Equus caballus ENSECAG00000009413 ortholog_one2many 1 retrogene
retro_ecab_477,
Homo sapiens ENSG00000125534 ortholog_one2many 1 retrogene
retro_hsap_3205,
Latimeria chalumnae ENSLACG00000002835 ortholog_one2many 1 retrogene
retro_lcha_69,
Loxodonta africana ENSLAFG00000026496 ortholog_many2many 2 retrogenes
retro_lafr_1082, retro_lafr_251,
Macaca mulatta ENSMMUG00000006064 ortholog_many2many 2 retrogenes
retro_mmul_2020, retro_mmul_41,
Monodelphis domestica ENSMODG00000016871 ortholog_many2many 2 retrogenes
retro_mdom_1325, retro_mdom_222,
Mustela putorius furo ENSMPUG00000008301 ortholog_one2many 12 retrogenes
retro_mputfur_1039, retro_mputfur_1097, retro_mputfur_1247, retro_mputfur_1282, retro_mputfur_1312, retro_mputfur_1327, retro_mputfur_1355, retro_mputfur_347, retro_mputfur_526, retro_mputfur_665, retro_mputfur_788, retro_mputfur_928,
Mus musculus ENSMUSG00000016344 ortholog_one2many 3 retrogenes
retro_mmus_1224, retro_mmus_658, retro_mmus_815,
Nomascus leucogenys ENSNLEG00000010068 ortholog_one2many 3 retrogenes
retro_nleu_1154, retro_nleu_1270, retro_nleu_1339,
Otolemur garnettii ENSOGAG00000008810 ortholog_one2many 2 retrogenes
retro_ogar_1797, retro_ogar_1912,
Pan troglodytes ENSPTRG00000013739 ortholog_one2many 1 retrogene
retro_ptro_2243,
Rattus norvegicus ENSRNOG00000012722 ortholog_one2many 1 retrogene
retro_rnor_752,
Sarcophilus harrisii ENSSHAG00000018338 ortholog_one2many 3 retrogenes
retro_shar_637, retro_shar_640, retro_shar_733,
Ictidomys tridecemlineatus ENSSTOG00000007808 ortholog_one2many 1 retrogene
retro_itri_1363,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_128 80.77 68.42
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2. retro_fcat_194 64.06 54.39
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3. retro_fcat_308 74.75 85.09
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4. retro_fcat_325 72.17 100.00
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5. retro_fcat_355 75.22 98.25
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6. retro_fcat_440 67.68 86.84
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7. retro_fcat_711 75.00 100.00
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8. retro_fcat_789 62.07 100.00
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9. retro_fcat_1018 65.42 93.86
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10. retro_fcat_1061 60.49 71.05
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11. retro_fcat_1293 70.59 100.00
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12. retro_fcat_1581 65.79 98.25
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13. retro_fcat_1669 78.95 65.79
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14. retro_fcat_1685 72.32 96.49
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Download FASTA sequences of all ENSFCAG00000024386 retrocopies