RetrogeneDB ID:

retro_fcat_128

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:A3:107479840..107480164(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSFCAG00000029998
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000024386
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_128
ATGGCAGCCATCCCCTCCAGCGGTTTGCTCATGGCCACCCACGACTATTACCGCTGCCTGGGTTCCACTGCCAGTAACAG
CTCCTGTGGAGGTGCAGAGTATCCTGGGGAAGCCATCCCTCACCACCCCAGTCCCTCCAAGGCCGGCCCAGGTCACTGGA
TGGCAAGTTTCTTTTTTGGGAAGTCCACCCTCCCGTTCATGGCAACACGCTCGGAATCTCCCCAGGCCTCCAGCGACTTG
ATCGCCTGTGACTTGACTCTGGAAGCCATGAGGAAGCAGCAGCCTGGTGGCCAGTCTGGCAAAGCGAACACCGAACACCC
GTCC

ORF - retro_fcat_128 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.77 %
Parental protein coverage: 68.42 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAAIPSSGSLVATHDYYRRRLGSTSSNSSCGSAEYPGEAIPHHPGLPKADPGHWWASFFFGKSTLPFMAT
MAAIPSSG.L.ATHDYYR..LGST.SNSSCG.AEYPGEAIPHHP...KA.PGHW.ASFFFGKSTLPFMAT
RetrocopyMAAIPSSGLLMATHDYYRC-LGSTASNSSCGGAEYPGEAIPHHPSPSKAGPGHWMASFFFGKSTLPFMAT
ParentalVLESPERS
..ESP..S
RetrocopyRSESPQAS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 11 .71 RPM
SRP017611_kidney 0 .00 RPM 102 .23 RPM
SRP017611_liver 0 .10 RPM 59 .24 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_128 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_128 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 56 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000318007 retrocopies
Equus caballus ENSECAG000000094131 retrocopy
Felis catus ENSFCAG00000024386 14 retrocopies
Homo sapiens ENSG000001255341 retrocopy
Latimeria chalumnae ENSLACG000000028351 retrocopy
Loxodonta africana ENSLAFG000000264962 retrocopies
Macaca mulatta ENSMMUG000000060642 retrocopies
Monodelphis domestica ENSMODG000000168712 retrocopies
Mustela putorius furoENSMPUG0000000830112 retrocopies
Mus musculus ENSMUSG000000163443 retrocopies
Nomascus leucogenys ENSNLEG000000100683 retrocopies
Otolemur garnettii ENSOGAG000000088102 retrocopies
Pan troglodytes ENSPTRG000000137391 retrocopy
Rattus norvegicus ENSRNOG000000127221 retrocopy
Sarcophilus harrisii ENSSHAG000000183383 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000078081 retrocopy



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