Parental gene: | PPID, ENSFCAG00000028926 |
| Aliases: | None |
| Description: | peptidylprolyl isomerase D [Source:HGNC Symbol;Acc:9257] |
| Organism: | Cat (Felis catus) |
| Coordinates: | B1:70120823..70134884(+) |
>ENSFCAG00000028926
ATGTCTCACCCGTCCCCCCAGACTAAGCCCTCCAACCCCAGTAACCCCCGAGTCTTCTTTGACGTGGACATCGGAGGGGA
GCGAGTTGGTCGAATTGTCTTAGAATTGTTTGCAGATATTGTACCGAAAACTGCAGAAAATTTTCGTGCGTTGTGTACAG
GAGAAAAAGGCATTGGACCCACCACTGGGAAACCTCTCCATTTCAAAGGATGTCCTTTCCATCGAATTATTAAGAAATTT
ATGATTCAGGGTGGAGACTTCTCAAATCAAAATGGGACAGGCGGAGAAAGTATTTATGGTGAAAAATTTGAAGATGAAAA
TTTCTATTATAAGCATGACCAGGAAGGTTTATTGAGCATGGCAAACGCAGGCTGCAATACAAATGGTTCTCAGTTCTTTA
TCACAACAGTTCCGACTCCTCATTTGGATGGGAAACATGTGGTATTTGGTCAAGTAATTAAAGGAATGGGTGTGGCAAGG
ATACTGGAAAATGTAGAAGTGAAAGGTGAAAAACCTGCCAAATTGTGCGTTATTGCAGAATGCGGAGAATTGAAGGAAGG
GGATGATTGGGGCATATTCCCAAAAGATGGCTCTGGTGACAGTCATCCAGATTTCCCTGAGGATGCAGATATAGATTTAA
AAGATGTAGATAAAATTTTACTAATAACAGAAGACTTAAAAAATATTGGAAATACTTTTTTCAAATCCCAGAATTGGGAG
ATGGCCATTAAAAAATATACAAAAGTTTTAAGATACGTGGAAGGTTCAAAGGCTGTTATTGAGAAAGCAGACAGATTGAA
GCTGCAACCTATAGCTTTAAGCTGCGTGCTGAATATTGGTGCTTGTAAACTGAAGATGTCAAATTGGCAGGGAGCAATTG
ACAGTTGTTTGGAGGCTCTTGAAATAGACCCATCAAATACGAAAGCATTGTACCGTAGAGCTCAAGGATGGCAAGGATTA
AAAGAATATGATCAAGCTTTGGCTGATCTTAAGAAAGCTCAGGAGATAGCACCAGAAGATAAAGCTATCCAGGCAGAATT
GCTGAAAGTCAAACAAAAGATAAAGGCACAGAAAGATAAAGAGAAGGCAGCATATGCAAAAATGTTTGCCTAA
ATGTCTCACCCGTCCCCCCAGACTAAGCCCTCCAACCCCAGTAACCCCCGAGTCTTCTTTGACGTGGACATCGGAGGGGA
GCGAGTTGGTCGAATTGTCTTAGAATTGTTTGCAGATATTGTACCGAAAACTGCAGAAAATTTTCGTGCGTTGTGTACAG
GAGAAAAAGGCATTGGACCCACCACTGGGAAACCTCTCCATTTCAAAGGATGTCCTTTCCATCGAATTATTAAGAAATTT
ATGATTCAGGGTGGAGACTTCTCAAATCAAAATGGGACAGGCGGAGAAAGTATTTATGGTGAAAAATTTGAAGATGAAAA
TTTCTATTATAAGCATGACCAGGAAGGTTTATTGAGCATGGCAAACGCAGGCTGCAATACAAATGGTTCTCAGTTCTTTA
TCACAACAGTTCCGACTCCTCATTTGGATGGGAAACATGTGGTATTTGGTCAAGTAATTAAAGGAATGGGTGTGGCAAGG
ATACTGGAAAATGTAGAAGTGAAAGGTGAAAAACCTGCCAAATTGTGCGTTATTGCAGAATGCGGAGAATTGAAGGAAGG
GGATGATTGGGGCATATTCCCAAAAGATGGCTCTGGTGACAGTCATCCAGATTTCCCTGAGGATGCAGATATAGATTTAA
AAGATGTAGATAAAATTTTACTAATAACAGAAGACTTAAAAAATATTGGAAATACTTTTTTCAAATCCCAGAATTGGGAG
ATGGCCATTAAAAAATATACAAAAGTTTTAAGATACGTGGAAGGTTCAAAGGCTGTTATTGAGAAAGCAGACAGATTGAA
GCTGCAACCTATAGCTTTAAGCTGCGTGCTGAATATTGGTGCTTGTAAACTGAAGATGTCAAATTGGCAGGGAGCAATTG
ACAGTTGTTTGGAGGCTCTTGAAATAGACCCATCAAATACGAAAGCATTGTACCGTAGAGCTCAAGGATGGCAAGGATTA
AAAGAATATGATCAAGCTTTGGCTGATCTTAAGAAAGCTCAGGAGATAGCACCAGAAGATAAAGCTATCCAGGCAGAATT
GCTGAAAGTCAAACAAAAGATAAAGGCACAGAAAGATAAAGAGAAGGCAGCATATGCAAAAATGTTTGCCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 15 .47 RPM |
| SRP017611_kidney | 20 .51 RPM |
| SRP017611_brain | 30 .30 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000016680 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000012069 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000001437 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000001046 | possible_ortholog | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000012655 | possible_ortholog | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000009317 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000017768 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000018108 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000006602 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000003317 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000015159 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000027408 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000001552 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_fcat_494 | 82.14 | 88.92 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_fcat_559 | 77.17 | 56.76 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSFCAG00000028926 retrocopies