Parental gene:

PSMC6, ENSG00000100519

Aliases:PSMC6, CADP44, HEL-S-73, P44, SUG2, p42
Description:proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Source:HGNC Symbol;Acc:9553]
Organism:Human (Homo sapiens)
Coordinates:14:53173889..53195305(+)


>ENSG00000100519
ATGGCCATTCCCGGCATCCCCTATGAGAGACGGCTTCTCATCATGGCGGACCCTAGAGATAAGGCGCTTCAGGACTACCG
CAAGAAGTTGCTTGAACACAAGGAGATCGACGGCCGTCTTAAGGAGTTAAGGGAACAATTAAAAGAACTTACCAAGCAGT
ATGAAAAGTCTGAAAATGATCTGAAGGCCCTACAGAGTGTTGGGCAGATCGTGGGTGAAGTGCTTAAACAGTTAACTGAA
GAAAAATTCATTGTTAAAGCTACCAATGGACCAAGATATGTTGTGGGTTGTCGTCGACAGCTTGACAAAAGTAAGCTGAA
GCCAGGAACAAGAGTTGCTTTGGATATGACTACACTAACTATCATGAGATATTTGCCGAGAGAGGTGGATCCACTGGTTT
ATAACATGTCTCATGAGGACCCTGGGAATGTTTCTTATTCTGAGATTGGAGGGCTATCAGAACAGATCCGGGAATTAAGA
GAGGTGATAGAATTACCTCTTACAAACCCAGAGTTATTTCAGCGTGTAGGAATAATACCTCCAAAAGGCTGTTTGTTATA
TGGACCACCAGGTACGGGAAAAACACTCTTGGCACGAGCCGTTGCTAGCCAGCTGGACTGCAATTTCTTAAAGGTTGTAT
CTAGTTCTATTGTAGACAAGTACATTGGTGAAAGTGCTCGTTTGATCAGAGAAATGTTTAATTATGCTAGAGATCATCAA
CCATGCATCATTTTTATGGATGAAATAGATGCTATTGGTGGTCGTCGGTTTTCTGAGGGTACTTCAGCTGACAGAGAGAT
TCAGAGAACGTTAATGGAGTTACTGAATCAAATGGATGGATTTGATACTCTGCATAGAGTTAAAATGATCATGGCTACAA
ACAGACCAGATACACTGGATCCTGCTTTGCTGCGTCCAGGAAGATTAGATAGAAAAATACATATTGATTTGCCAAATGAA
CAAGCAAGATTAGACATACTGAAAATCCATGCAGGTCCCATTACAAAGCATGGTGAAATAGATTATGAAGCAATTGTGAA
GCTTTCGGATGGCTTTAATGGAGCAGATCTGAGAAATGTTTGTACTGAAGCAGGTATGTTCGCAATTCGTGCTGATCATG
ATTTTGTAGTACAGGAAGACTTCATGAAAGCAGTCAGAAAAGTGGCTGATTCTAAGAAGCTGGAGTCTAAATTGGACTAC
AAACCTGTGTAA

Library Parental gene expression (RPM)
bodymap2_liver 60 .58 RPM
bodymap2_lung 49 .58 RPM
bodymap2_breast 65 .43 RPM
bodymap2_adipose 43 .19 RPM
bodymap2_adrenal 57 .05 RPM
bodymap2_skeletal_muscle 45 .18 RPM
bodymap2_thyroid 89 .56 RPM
bodymap2_prostate 61 .90 RPM
bodymap2_colon 64 .04 RPM
bodymap2_testis 76 .28 RPM
bodymap2_brain 72 .45 RPM
bodymap2_heart 58 .06 RPM
bodymap2_white_blood_cells 56 .82 RPM
bodymap2_lymph_node 46 .14 RPM
bodymap2_ovary 73 .17 RPM
bodymap2_kidney 69 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007126 ortholog_one2many 2 retrogenes
retro_cjac_204, retro_cjac_3221,
Cavia porcellus ENSCPOG00000009477 ortholog_one2many 1 retrogene
retro_cpor_47,
Gorilla gorilla ENSGGOG00000002152 ortholog_one2one 2 retrogenes
retro_ggor_2727, retro_ggor_808,
Macropus eugenii ENSMEUG00000007084 ortholog_one2one 3 retrogenes
retro_meug_1700, retro_meug_2090, retro_meug_923,
Monodelphis domestica ENSMODG00000014500 ortholog_one2one 1 retrogene
retro_mdom_438,
Nomascus leucogenys ENSNLEG00000012518 ortholog_one2one 2 retrogenes
retro_nleu_559, retro_nleu_900,
Otolemur garnettii ENSOGAG00000010011 ortholog_one2one 1 retrogene
retro_ogar_3101,
Pongo abelii ENSPPYG00000005820 ortholog_one2one 2 retrogenes
retro_pabe_3334, retro_pabe_858,
Pan troglodytes ENSPTRG00000006352 ortholog_one2one 2 retrogenes
retro_ptro_2752, retro_ptro_699,
Rattus norvegicus ENSRNOG00000007203 ortholog_one2one 1 retrogene
retro_rnor_1480,
Tursiops truncatus ENSTTRG00000003880 ortholog_one2one 1 retrogene
retro_ttru_117,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1022 89.34 97.77
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2. retro_hsap_4059 96.94 97.27
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Download FASTA sequences of all ENSG00000100519 retrocopies