Parental gene: | PSMC6, ENSPPYG00000005820 |
| Aliases: | None |
| Description: | proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Source:HGNC Symbol;Acc:9553] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 14:53183666..53206120(+) |
>ENSPPYG00000005820
ATGGCCATTCCCGGCATCCCCTATGAGAGACGGCTTCTCATCATGGCGGACCCTAGAGATAAGGCGCTTCAGGACTACCG
CAAGAAGCTGCTTGAGCACAAGGAGATCGACGGCCGTCTTAAGGAGTTAAGGGAACAATTAAAAGAACTTACCAAGCAGT
ATGAAAAGTCTGAAAATGATCTGAAGGCCCTACAAAGTGTTGGGCAGATTGTGGGTGAAGTGCTTAAACAGTTAACTGAA
GAAAAATTCATTGTTAAAGCTACCAATGGACCAAGATATGTTGTGGGTTGTCGTCGACAGCTTGACAAAAGTAAGCTGAA
GCCAGGAACGAGAGTTGCTTTGGATATGACTACACTAACTATCATGAGATATTTGCCAAGAGAGGTGGATCCACTGGTTT
ATAACATGTCTCATGAGGACCCTGGGAATGTTTCTTATTCTGAGATTGGAGGGCTATCAGAACAGATCCGGGAATTAAGA
GAGGTGATAGAATTACCTCTTACAAACCCAGAGTTATTTCAGCGTGTAGGAATAATACCTCCAAAAGGCTGTTTGTTATA
TGGACCACCAGGTACGGGAAAAACACTCTTGGCACGAGCCGTTGCTAGCCAGCTGGACTGCAATTTCTTAAAGGTTGTAT
CTAGTTCTATTGTAGACAAGTACATTGGTGAAAGTGCTCGTTTGATCAGAGAAATGTTTAATTATGCTAGAGATCATCAA
CCATGCATCATTTTTATGGATGAAATAGATGCTATTGGTGGTCGTCGGTTTTCTGAGGGTACTTCAGCTGACAGAGAGAT
TCAGAGAACATTAATGGAGTTACTGAATCAAATGGATGGATTTGATACTCTGCACAGAGTTAAAATGATCATGGCTACAA
ACAGACCAGATACACTGGATCCTGCTTTGCTGCGTCCAGGAAGATTAGATAGAAAAATACATATTGATTTGCCAAATGAA
CAAGCAAGATTAGACATACTGAAAATCCATGCAGGTCCCATTACAAAGCATGGTGAAATAGATTATGAAGCAATTGTGAA
GCTTTCAGATGGCTTTAATGGAGCAGACCTGAGAAATGTTTGTACTGAAGCAGGTATGTTCGCAATTCGTGCTGATCATG
ATTTTGTAGTACAGGAAGACTTCATGAAAGCAGTCAGAAAAGTGGCTGATTCTAAGAAGCTGGAGTCTAAATTGGACTAC
AAACCTGTGTAA
ATGGCCATTCCCGGCATCCCCTATGAGAGACGGCTTCTCATCATGGCGGACCCTAGAGATAAGGCGCTTCAGGACTACCG
CAAGAAGCTGCTTGAGCACAAGGAGATCGACGGCCGTCTTAAGGAGTTAAGGGAACAATTAAAAGAACTTACCAAGCAGT
ATGAAAAGTCTGAAAATGATCTGAAGGCCCTACAAAGTGTTGGGCAGATTGTGGGTGAAGTGCTTAAACAGTTAACTGAA
GAAAAATTCATTGTTAAAGCTACCAATGGACCAAGATATGTTGTGGGTTGTCGTCGACAGCTTGACAAAAGTAAGCTGAA
GCCAGGAACGAGAGTTGCTTTGGATATGACTACACTAACTATCATGAGATATTTGCCAAGAGAGGTGGATCCACTGGTTT
ATAACATGTCTCATGAGGACCCTGGGAATGTTTCTTATTCTGAGATTGGAGGGCTATCAGAACAGATCCGGGAATTAAGA
GAGGTGATAGAATTACCTCTTACAAACCCAGAGTTATTTCAGCGTGTAGGAATAATACCTCCAAAAGGCTGTTTGTTATA
TGGACCACCAGGTACGGGAAAAACACTCTTGGCACGAGCCGTTGCTAGCCAGCTGGACTGCAATTTCTTAAAGGTTGTAT
CTAGTTCTATTGTAGACAAGTACATTGGTGAAAGTGCTCGTTTGATCAGAGAAATGTTTAATTATGCTAGAGATCATCAA
CCATGCATCATTTTTATGGATGAAATAGATGCTATTGGTGGTCGTCGGTTTTCTGAGGGTACTTCAGCTGACAGAGAGAT
TCAGAGAACATTAATGGAGTTACTGAATCAAATGGATGGATTTGATACTCTGCACAGAGTTAAAATGATCATGGCTACAA
ACAGACCAGATACACTGGATCCTGCTTTGCTGCGTCCAGGAAGATTAGATAGAAAAATACATATTGATTTGCCAAATGAA
CAAGCAAGATTAGACATACTGAAAATCCATGCAGGTCCCATTACAAAGCATGGTGAAATAGATTATGAAGCAATTGTGAA
GCTTTCAGATGGCTTTAATGGAGCAGACCTGAGAAATGTTTGTACTGAAGCAGGTATGTTCGCAATTCGTGCTGATCATG
ATTTTGTAGTACAGGAAGACTTCATGAAAGCAGTCAGAAAAGTGGCTGATTCTAAGAAGCTGGAGTCTAAATTGGACTAC
AAACCTGTGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 26 .54 RPM |
| SRP007412_cerebellum | 36 .24 RPM |
| SRP007412_heart | 26 .79 RPM |
| SRP007412_kidney | 24 .53 RPM |
| SRP007412_liver | 26 .96 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000007126 | ortholog_one2many | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000009477 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000100519 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000002152 | ortholog_one2one | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000007084 | ortholog_one2one | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000014500 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000012518 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000010011 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000006352 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000007203 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000003880 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_858 | 88.48 | 94.54 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_3334 | 96.95 | 97.27 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000005820 retrocopies