Parental gene:

CDK5RAP3, ENSG00000108465

Aliases:CDK5RAP3, C53, HSF-27, IC53, LZAP, MST016, OK/SW-cl.114, PP1553
Description:CDK5 regulatory subunit associated protein 3 [Source:HGNC Symbol;Acc:18673]
Organism:Human (Homo sapiens)
Coordinates:17:46045175..46059140(+)


>ENSG00000108465
ATGGAGGACCATCAGCACGTGCCCATCGACATCCAGACCAGCAAGCTGCTCGATTGGCTGGTGGACAGAAGGCACTGCAG
CCTGAAATGGCAGAGTCTGGTGCTGACGATCCGCGAGAAGATCAATGCTGCCATCCAGGACATGCCAGAGAGCGAAGAGA
TCGCCCAGCTGCTGTCTGGGTCCTACATTCACTACTTTCACTGCCTAAGAATCCTGGACCTTCTCAAAGGCACAGAGGCC
TCCACGAAGAATATTTTTGGCCGATACTCTTCACAGCGGATGAAGGATTGGCAGGAGATTATAGCTCTGTATGAGAAGGA
CAACACCTACTTAGTGGAACTCTCTAGCCTCCTGGTTCGGAATGTCAACTATGAGATCCCCTCACTGAAGAAGCAGATTG
CCAAGTGCCAGCAGCTGCAGCAAGAATACAGCCGCAAGGAGGAGGAGTGCCAGGCAGGGGCTGCCGAGATGCGGGAGCAG
TTCTACCACTCCTGCAAGCAGTATGGCATCACGGGCGAAAATGTCCGAGGAGAACTGCTGGCCCTGGTGAAGGACCTGCC
GAGTCAGCTGGCTGAGATTGGGGCAGCGGCTCAGCAGTCCCTGGGGGAAGCCATTGACGTGTACCAGGCGTCTGTGGGGT
TTGTGTGTGAGAGCCCCACAGAGCAGGTGTTGCCAATGCTGCGGTTCGTGCAGAAGCGGGGAAACTCAACGGTGTACGAG
TGGAGGACAGGGACAGAGCCCTCTGTGGTGGAACGACCCCACCTCGAGGAGCTTCCTGAGCAGGTGGCAGAAGATGCGAT
TGACTGGGGCGACTTTGGGGTAGAGGCAGTGTCTGAGGGGACTGACTCTGGCATCTCTGCCGAGGCTGCTGGAATCGACT
GGGGCATCTTCCCGGAATCAGATTCAAAGGATCCTGGAGGTGATGGGATAGACTGGGGAGACGATGCTGTTGCTTTGCAG
ATCACAGTGCTGGAAGCAGGAACCCAGGCTCCAGAAGGTGTTGCCAGGGGCCCAGATGCCCTGACACTGCTTGAATACAC
TGAGACCCGGAATCAGTTCCTTGATGAGCTCATGGAGCTTGAGATCTTCTTAGCCCAGAGAGCAGTGGAGTTGAGTGAGG
AGGCAGATGTCCTGTCTGTGAGCCAGTTCCAGCTGGCTCCAGCCATCCTGCAGGGCCAGACCAAAGAGAAGATGGTTACC
ATGGTGTCAGTGCTGGAGGATCTGATTGGCAAGCTTACCAGTCTTCAGCTGCAACACCTGTTTATGATCCTGGCCTCACC
AAGGTATGTGGACCGAGTGACTGAATTCCTCCAGCAAAAGCTGAAGCAGTCCCAGCTGCTGGCTTTGAAGAAAGAGCTGA
TGGTGCAGAAGCAGCAGGAGGCACTTGAGGAGCAGGCGGCTCTGGAGCCTAAGCTGGACCTGCTACTGGAGAAGACCAAG
GAGCTGCAGAAGCTGATTGAAGCTGACATCTCCAAGAGGTACAGCGGGCGCCCTGTGAACCTGATGGGAACCTCTCTGTG
A

Library Parental gene expression (RPM)
bodymap2_liver 31 .22 RPM
bodymap2_lung 26 .65 RPM
bodymap2_breast 38 .09 RPM
bodymap2_adipose 27 .19 RPM
bodymap2_adrenal 62 .23 RPM
bodymap2_skeletal_muscle 12 .50 RPM
bodymap2_thyroid 65 .78 RPM
bodymap2_prostate 45 .78 RPM
bodymap2_colon 19 .20 RPM
bodymap2_testis 38 .42 RPM
bodymap2_brain 26 .89 RPM
bodymap2_heart 10 .76 RPM
bodymap2_white_blood_cells 24 .89 RPM
bodymap2_lymph_node 63 .74 RPM
bodymap2_ovary 62 .57 RPM
bodymap2_kidney 51 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Gorilla gorilla ENSGGOG00000022994 ortholog_one2one 1 retrogene
retro_ggor_1535,
Nomascus leucogenys ENSNLEG00000002109 ortholog_one2one 1 retrogene
retro_nleu_2448,
Ochotona princeps ENSOPRG00000004107 ortholog_one2one 2 retrogenes
retro_opri_276, retro_opri_480,
Pongo abelii ENSPPYG00000008888 ortholog_one2one 1 retrogene
retro_pabe_1818,
Pan troglodytes ENSPTRG00000009345 ortholog_one2one 1 retrogene
retro_ptro_1425,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2466 93.87 100.00
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Download FASTA sequences of all ENSG00000108465 retrocopies