RetrogeneDB ID: | retro_nleu_2448 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397356.1:2953180..2954114(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDK5RAP3 | ||
Ensembl ID: | ENSNLEG00000002109 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.62 % |
Parental protein coverage: | 62.45 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MEDHQHVPIDIQTSKLLDWLVDRRHCSLKWQSLVLTIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLR |
MEDHQH.PIDIQTSKLL.WLVDRRHCSLKWQS.VL.I.EKINAAIQDMPESEEIAQLLSGSYIHYF.CLR | |
Retrocopy | MEDHQHMPIDIQTSKLLNWLVDRRHCSLKWQSVVLMIQEKINAAIQDMPESEEIAQLLSGSYIHYFRCLR |
Parental | ILDLLKGTEASTKNIFGRYSSQRMKDWQEIIALYEKDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQ |
ILDLLKGTEASTKN.FG.YSSQRMK.WQEIIALYEKDNTYLVELSSLLVRNVNYE.PSLKKQIAKCQQLQ | |
Retrocopy | ILDLLKGTEASTKNLFG*YSSQRMKGWQEIIALYEKDNTYLVELSSLLVRNVNYEMPSLKKQIAKCQQLQ |
Parental | QEYSRKEEECQAGAAEMREQFYQSCKQYGITGENVRGELLALVKDLPSQLAEIGAAAQQSLGEAIDVYQA |
QEYSRKEEECQ.GAAEMREQFY.SCKQ.GITGENV.GELLALVKDL.SQLAE.GAAAQQSLGEAIDVYQA | |
Retrocopy | QEYSRKEEECQTGAAEMREQFYHSCKQCGITGENV*GELLALVKDLLSQLAETGAAAQQSLGEAIDVYQA |
Parental | SVGFVCESP-TEQVLPMLR-FVQKRGNSTVYEWRTGTEPSVVERPHLEELPEQVAEDAIDWGDFGVQAVS |
.VGFV...P.TEQ.LPMLR..VQK.GNSTVY.WRTGTEPSVVERPHL.ELPEQVAEDAIDW.DFGV.AVS | |
Retrocopy | PVGFV-RAP<TEQMLPMLR<VVQKQGNSTVYKWRTGTEPSVVERPHLKELPEQVAEDAIDWDDFGVEAVS |
Parental | EGTDSGISAEAAGIDWGIFPESDSKDPGGDGIDWGDDA |
EGT.SGISAEAAGIDWGIFPESDSKDPGGD...WGDDA | |
Retrocopy | EGTNSGISAEAAGIDWGIFPESDSKDPGGD---WGDDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000108465 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022994 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002109 | 1 retrocopy |
retro_nleu_2448 ,
|
Ochotona princeps | ENSOPRG00000004107 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008888 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009345 | 1 retrocopy |