Parental gene:

CCT7, ENSG00000135624

Aliases:CCT7, CCTETA, CCTH, NIP7-1, TCP1ETA
Description:chaperonin containing TCP1, subunit 7 (eta) [Source:HGNC Symbol;Acc:1622]
Organism:Human (Homo sapiens)
Coordinates:2:73460547..73480149(+)


>ENSG00000135624
ATGATGCCCACACCAGTTATCCTATTGAAAGAGGGGACTGATAGCTCCCAAGGCATCCCCCAGCTTGTGAGTAACATCAG
TGCCTGCCAGGTGATTGCTGAGGCTGTAAGAACTACCCTGGGTCCCCGTGGCATGGACAAGCTTATTGTAGATGGCAGAG
GCAAAGCAACAATTTCTAATGATGGGGCCACAATTCTGAAACTTCTTGATGTTGTCCATCCTGCAGCAAAGACTTTGGTA
GACATTGCCAAATCCCAAGATGCTGAGGTGGGTGATGGCACCACCTCAGTGACCTTGCTGGCTGCAGAGTTTCTGAAGCA
GGTGAAACCCTATGTGGAGGAAGGTTTACACCCCCAGATCATCATTCGAGCTTTCCGCACAGCCACCCAGCTGGCAGTTA
ACAAGATCAAAGAGATTGCTGTGACCGTGAAGAAGGCAGATAAAGTGGAGCAGAGGAAGCTGCTGGAAAAGTGTGCCATG
ACCGCTCTGAGCTCCAAGCTGATCTCCCAGCAGAAAGCTTTCTTTGCTAAGATGGTGGTGGATGCAGTGATGATGCTCGA
TGATTTGCTGCAGCTTAAAATGATTGGAATCAAGAAGGTACAGGGTGGAGCCCTCGAGGATTCTCAGCTGGTAGCTGGTG
TTGCATTCAAGAAGACTTTCTCTTACGCTGGGTTTGAAATGCAACCCAAAAAGTACCACAATCCCAAGATTGCCCTTTTG
AATGTCGAGCTCGAGTTGAAAGCTGAGAAAGACAATGCTGAGATAAGAGTCCACACAGTTGAGGATTATCAGGCAATTGT
TGATGCTGAGTGGAACATTCTCTATGACAAGTTAGAGAAGATCCATCATTCTGGAGCCAAAGTTGTCTTGTCCAAACTCC
CCATTGGGGATGTGGCCACCCAGTACTTTGCTGACAGGGACATGTTCTGTGCTGGCCGAGTACCTGAGGAGGATCTGAAG
AGGACAATGATGGCCTGTGGAGGCTCAATCCAGACCAGTGTGAATGCTCTGTCAGCAGATGTGCTGGGTCGATGCCAGGT
GTTTGAAGAGACCCAGATTGGAGGCGAGAGGTACAATTTTTTTACTGGCTGCCCCAAGGCCAAGACATGCACCTTCATTC
TCCGTGGCGGCGCCGAGCAGTTTATGGAGGAGACAGAGCGGTCCCTGCATGATGCCATCATGATCGTCAGGAGGGCCATC
AAGAATGATTCAGTGGTGGCTGGTGGCGGGGCCATTGAGATGGAACTCTCCAAGTACCTGCGGGATTACTCAAGGACTAT
TCCAGGAAAACAGCAGCTGTTGATTGGGGCATATGCCAAGGCCTTGGAGATTATCCCACGCCAGCTGTGTGACAATGCTG
GCTTTGATGCCACAAACATTCTCAACAAGCTGCGGGCTCGGCATGCCCAGGGGGGTACATGGTATGGAGTAGACATCAAC
AACGAGGACATTGCTGACAACTTTGAAGCTTTCGTGTGGGAGCCAGCTATGGTGCGGATCAATGCGCTGACAGCAGCCTC
TGAGGCTGCGTGCCTGATCGTGTCTGTAGATGAAACCATCAAGAACCCCCGCTCGACTGTGGATGCTCCCACAGCAGCAG
GCCGGGGCCGTGGTCGTGGCCGCCCCCACTGA

Library Parental gene expression (RPM)
bodymap2_liver 86 .31 RPM
bodymap2_lung 106 .47 RPM
bodymap2_breast 115 .10 RPM
bodymap2_adipose 135 .75 RPM
bodymap2_adrenal 180 .87 RPM
bodymap2_skeletal_muscle 234 .86 RPM
bodymap2_thyroid 162 .48 RPM
bodymap2_prostate 178 .21 RPM
bodymap2_colon 183 .38 RPM
bodymap2_testis 270 .32 RPM
bodymap2_brain 112 .61 RPM
bodymap2_heart 110 .66 RPM
bodymap2_white_blood_cells 137 .13 RPM
bodymap2_lymph_node 139 .37 RPM
bodymap2_ovary 196 .35 RPM
bodymap2_kidney 140 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000008879 ortholog_one2many 1 retrogene
retro_cfam_151,
Cavia porcellus ENSCPOG00000019869 ortholog_one2one 1 retrogene
retro_cpor_1458,
Gorilla gorilla ENSGGOG00000007766 ortholog_one2one 1 retrogene
retro_ggor_2274,
Macropus eugenii ENSMEUG00000000416 ortholog_one2one 1 retrogene
retro_meug_1995,
Macaca mulatta ENSMMUG00000012448 ortholog_one2one 1 retrogene
retro_mmul_2093,
Nomascus leucogenys ENSNLEG00000010414 ortholog_one2one 1 retrogene
retro_nleu_1175,
Otolemur garnettii ENSOGAG00000009162 ortholog_one2one 2 retrogenes
retro_ogar_2001, retro_ogar_2698,
Pongo abelii ENSPPYG00000012297 ortholog_one2one 1 retrogene
retro_pabe_2760,
Pan troglodytes ENSPTRG00000012060 ortholog_one2one 1 retrogene
retro_ptro_2133,
Rattus norvegicus ENSRNOG00000015630 ortholog_one2one 2 retrogenes
retro_rnor_2179, retro_rnor_535,
Tupaia belangeri ENSTBEG00000002066 ortholog_one2one 2 retrogenes
retro_tbel_3708, retro_tbel_3751,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_3354 76.90 50.83
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Download FASTA sequences of all ENSG00000135624 retrocopies