Parental gene: | GYG1, ENSG00000163754 |
| Aliases: | GYG1, GSD15, GYG |
| Description: | glycogenin 1 [Source:HGNC Symbol;Acc:4699] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 3:148709127..148745419(+) |
>ENSG00000163754
ATGACAGATCAGGCCTTTGTGACACTAACCACAAACGATGCCTACGCCAAAGGTGCCCTGGTCCTGGGATCATCTCTGAA
ACAGCACAGGACCACCAGGAGGCTGGTCGTGCTCGCCACCCCTCAGGTCTCAGACTCCATGAGAAAAGTTTTAGAGACAG
TCTTTGATGAAGTCATCATGGTAGATGTCTTGGACAGTGGCGATTCTGCTCATCTAACCTTAATGAAGAGGCCAGAGTTG
GGTGTCACGCTGACAAAGCTCCACTGCTGGTCGCTTACACAGTATTCAAAATGTGTATTCATGGATGCAGATACTCTGGT
CCTAGCAAATATTGATGATCTTTTTGACAGAGAAGAATTGTCAGCAGCACCAGACCCAGGGTGGCCTGACTGCTTCAATT
CCGGAGTCTTCGTTTATCAGCCTTCAGTTGAAACATACAATCAGCTGTTGCATCTTGCTTCTGAGCAAGGTAGTTTTGAT
GGTGGGGACCAAGGCATACTGAACACATTTTTTAGCAGCTGGGCAACAACAGATATCAGAAAACACCTGCCGTTTATTTA
TAACCTAAGCAGCATCTCTATATACTCCTACCTCCCGGCATTTAAAGTGTTTGGTGCAAGTGCCAAAGTTGTGCATTTCC
TGGGACGAGTCAAACCATGGAATTATACTTATGATCCCAAAACAAAAAGTGTCAAAAGTGAGGCCCATGATCCCAACATG
ACTCATCCAGAGTTTCTCATCCTGTGGTGGAACATCTTTACCACCAACGTTTTACCTCTGCTTCAACAATTTGGCCTTGT
CAAAGACACCTGCTCATATGTAAATGTGCTTTCAGACTTGGTCTATACACTGGCTTTCTCTTGTGGCTTCTGTAGAAAGG
AAGATGTCTCAGGAGCCATATCACATCTGTCCCTTGGGGAGATCCCAGCTATGGCACAGCCGTTTGTATCCTCGGAAGAA
CGGAAGGAACGATGGGAACAGGGCCAGGCTGATTATATGGGAGCAGATTCCTTTGACAACATCAAGAGGAAACTTGACAC
TTACCTCCAGTAG
ATGACAGATCAGGCCTTTGTGACACTAACCACAAACGATGCCTACGCCAAAGGTGCCCTGGTCCTGGGATCATCTCTGAA
ACAGCACAGGACCACCAGGAGGCTGGTCGTGCTCGCCACCCCTCAGGTCTCAGACTCCATGAGAAAAGTTTTAGAGACAG
TCTTTGATGAAGTCATCATGGTAGATGTCTTGGACAGTGGCGATTCTGCTCATCTAACCTTAATGAAGAGGCCAGAGTTG
GGTGTCACGCTGACAAAGCTCCACTGCTGGTCGCTTACACAGTATTCAAAATGTGTATTCATGGATGCAGATACTCTGGT
CCTAGCAAATATTGATGATCTTTTTGACAGAGAAGAATTGTCAGCAGCACCAGACCCAGGGTGGCCTGACTGCTTCAATT
CCGGAGTCTTCGTTTATCAGCCTTCAGTTGAAACATACAATCAGCTGTTGCATCTTGCTTCTGAGCAAGGTAGTTTTGAT
GGTGGGGACCAAGGCATACTGAACACATTTTTTAGCAGCTGGGCAACAACAGATATCAGAAAACACCTGCCGTTTATTTA
TAACCTAAGCAGCATCTCTATATACTCCTACCTCCCGGCATTTAAAGTGTTTGGTGCAAGTGCCAAAGTTGTGCATTTCC
TGGGACGAGTCAAACCATGGAATTATACTTATGATCCCAAAACAAAAAGTGTCAAAAGTGAGGCCCATGATCCCAACATG
ACTCATCCAGAGTTTCTCATCCTGTGGTGGAACATCTTTACCACCAACGTTTTACCTCTGCTTCAACAATTTGGCCTTGT
CAAAGACACCTGCTCATATGTAAATGTGCTTTCAGACTTGGTCTATACACTGGCTTTCTCTTGTGGCTTCTGTAGAAAGG
AAGATGTCTCAGGAGCCATATCACATCTGTCCCTTGGGGAGATCCCAGCTATGGCACAGCCGTTTGTATCCTCGGAAGAA
CGGAAGGAACGATGGGAACAGGGCCAGGCTGATTATATGGGAGCAGATTCCTTTGACAACATCAAGAGGAAACTTGACAC
TTACCTCCAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 14 .93 RPM |
| bodymap2_lung | 61 .18 RPM |
| bodymap2_breast | 43 .58 RPM |
| bodymap2_adipose | 60 .79 RPM |
| bodymap2_adrenal | 72 .05 RPM |
| bodymap2_skeletal_muscle | 548 .82 RPM |
| bodymap2_thyroid | 115 .87 RPM |
| bodymap2_prostate | 171 .62 RPM |
| bodymap2_colon | 206 .41 RPM |
| bodymap2_testis | 214 .42 RPM |
| bodymap2_brain | 52 .25 RPM |
| bodymap2_heart | 134 .67 RPM |
| bodymap2_white_blood_cells | 85 .76 RPM |
| bodymap2_lymph_node | 56 .85 RPM |
| bodymap2_ovary | 87 .69 RPM |
| bodymap2_kidney | 46 .88 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000001467 | ortholog_one2one | 2 retrogenes | |
| Danio rerio | ENSDARG00000011934 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000006382 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000005521 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000002557 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000003516 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000025899 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000015509 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_159 | 88.83 | 58.86 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_1222 | 80.26 | 69.37 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000163754 retrocopies