Parental gene: | SHISA5, ENSG00000164054 |
| Aliases: | SHISA5, SCOTIN |
| Description: | shisa homolog 5 (Xenopus laevis) [Source:HGNC Symbol;Acc:30376] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 3:48509196..48542259(-) |
>ENSG00000164054
ATGACTGCGCCGGTCCCCGCGCCGCGGATCCTGTTGCCGTTGCTGTTGCTGCTGCTGCTAACGCCGCCTCCGGGTGCACG
TGGTGAGGTGTGTATGGCTTCCCGTGGACTCAGCCTCTTCCCCGAGTCCTGTCCAGATTTCTGCTGTGGTACCTGTGATG
ACCAATACTGCTGCTCTGACGTGCTGAAGAAATTTGTGTGGAGCGAGGAAAGGTGTGCTGTGCCTGAGGCCAGCGTGCCT
GCCAGTGTAGAGCCGGTGGAGCAGCTGGGCTCGGCGCTGAGGTTTCGCCCTGGCTACAACGACCCCATGTCAGGGTTCGG
AGCGACCTTGGCCGTTGGCCTGACCATCTTTGTGCTGTCTGTCGTCACTATCATCATCTGCTTCACCTGCTCCTGCTGCT
GCCTTTACAAGACGTGCCGCCGACCACGTCCGGTTGTCACCACCACCACATCCACCACTGTGGTGCATGCCCCTTATCCT
CAGCCTCCAAGTGTGCCGCCCAGCTACCCTGGACCAAGCTACCAGGGCTACCACACCATGCCGCCTCAGCCAGGGATGCC
AGCAGCACCCTACCCAATGCAGTACCCACCACCTTACCCAGCCCAGCCCATGGGCCCACCGGCCTACCACGAGACCCTGG
CTGGAGGAGCAGCCGCGCCCTACCCCGCCAGCCAGCCTCCTTACAACCCGGCCTACATGGATGCCCCGAAGGCGGCCCTC
TGA
ATGACTGCGCCGGTCCCCGCGCCGCGGATCCTGTTGCCGTTGCTGTTGCTGCTGCTGCTAACGCCGCCTCCGGGTGCACG
TGGTGAGGTGTGTATGGCTTCCCGTGGACTCAGCCTCTTCCCCGAGTCCTGTCCAGATTTCTGCTGTGGTACCTGTGATG
ACCAATACTGCTGCTCTGACGTGCTGAAGAAATTTGTGTGGAGCGAGGAAAGGTGTGCTGTGCCTGAGGCCAGCGTGCCT
GCCAGTGTAGAGCCGGTGGAGCAGCTGGGCTCGGCGCTGAGGTTTCGCCCTGGCTACAACGACCCCATGTCAGGGTTCGG
AGCGACCTTGGCCGTTGGCCTGACCATCTTTGTGCTGTCTGTCGTCACTATCATCATCTGCTTCACCTGCTCCTGCTGCT
GCCTTTACAAGACGTGCCGCCGACCACGTCCGGTTGTCACCACCACCACATCCACCACTGTGGTGCATGCCCCTTATCCT
CAGCCTCCAAGTGTGCCGCCCAGCTACCCTGGACCAAGCTACCAGGGCTACCACACCATGCCGCCTCAGCCAGGGATGCC
AGCAGCACCCTACCCAATGCAGTACCCACCACCTTACCCAGCCCAGCCCATGGGCCCACCGGCCTACCACGAGACCCTGG
CTGGAGGAGCAGCCGCGCCCTACCCCGCCAGCCAGCCTCCTTACAACCCGGCCTACATGGATGCCCCGAAGGCGGCCCTC
TGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 49 .70 RPM |
| bodymap2_lung | 174 .09 RPM |
| bodymap2_breast | 67 .51 RPM |
| bodymap2_adipose | 102 .03 RPM |
| bodymap2_adrenal | 106 .83 RPM |
| bodymap2_skeletal_muscle | 20 .53 RPM |
| bodymap2_thyroid | 60 .24 RPM |
| bodymap2_prostate | 120 .53 RPM |
| bodymap2_colon | 77 .65 RPM |
| bodymap2_testis | 65 .82 RPM |
| bodymap2_brain | 35 .11 RPM |
| bodymap2_heart | 23 .85 RPM |
| bodymap2_white_blood_cells | 253 .76 RPM |
| bodymap2_lymph_node | 118 .18 RPM |
| bodymap2_ovary | 105 .16 RPM |
| bodymap2_kidney | 74 .47 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000002915 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000028207 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000010062 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000006485 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000013902 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000014888 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_4706 | 81.02 | 99.27 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_4812 | 79.56 | 99.27 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000164054 retrocopies