RetrogeneDB ID: | retro_nleu_1984 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397321.1:561308..561705(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SHISA5 | ||
Ensembl ID: | ENSNLEG00000006485 | ||
Aliases: | None | ||
Description: | shisa homolog 5 (Xenopus laevis) [Source:HGNC Symbol;Acc:30376] |
Percent Identity: | 78.68 % |
Parental protein coverage: | 57.69 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GFGAT-LAIGLTIFVLSVVTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPS |
GFGA...AI.LTIFVLSV.TII.CFT...CCLYK.CRRP.PVVT..T.TTVVHAPY.QPPS.PPSYPG.S | |
Retrocopy | GFGAM>VAISLTIFVLSVITIITCFT---CCLYKMCRRPCPVVTSITLTTVVHAPYTQPPSMPPSYPGSS |
Parental | YQGYHTMPPQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAA |
YQGY..M.PQPGMPAAPYP..YPPPY.AQPMGP.AYHETLAGGA.APYP.SQPPYNPAY..A.KAA | |
Retrocopy | YQGYYPMLPQPGMPAAPYPT*YPPPYSAQPMGPQAYHETLAGGATAPYPKSQPPYNPAYIYALKAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002915 | 2 retrocopies | |
Homo sapiens | ENSG00000164054 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028207 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000010062 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006485 | 1 retrocopy |
retro_nleu_1984 ,
|
Pongo abelii | ENSPPYG00000013902 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000014888 | 1 retrocopy |