RetrogeneDB ID: | retro_pabe_2120 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2b:59929447..59929856(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SHISA5 | ||
Ensembl ID: | ENSPPYG00000013902 | ||
Aliases: | None | ||
Description: | protein shisa-5 [Source:RefSeq peptide;Acc:NP_001124981] |
Percent Identity: | 94.16 % |
Parental protein coverage: | 65.07 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GFGATLAVGLTIFVLSVVTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSY |
GFGATLAVGLTIFVLSVVTIIICFTCSCCCLYK.C..PRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSY | |
Retrocopy | GFGATLAVGLTIFVLSVVTIIICFTCSCCCLYKMCH*PRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSY |
Parental | QGYHTMPPQPGMPAAPYPMQYPPP-YPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL |
QGYHTMPP.PGMPAAPYPMQ.PPP.YPAQPMGPPAYHETLAGGAAAPYP.SQ.PYNPAYMDAPKAAL | |
Retrocopy | QGYHTMPP*PGMPAAPYPMQHPPP>YPAQPMGPPAYHETLAGGAAAPYPTSQAPYNPAYMDAPKAAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .28 RPM | 111 .47 RPM |
SRP007412_cerebellum | 0 .12 RPM | 38 .91 RPM |
SRP007412_heart | 0 .09 RPM | 23 .54 RPM |
SRP007412_kidney | 0 .13 RPM | 88 .80 RPM |
SRP007412_liver | 0 .18 RPM | 70 .51 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002915 | 2 retrocopies | |
Homo sapiens | ENSG00000164054 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028207 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000010062 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006485 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013902 | 3 retrocopies |
retro_pabe_2120 , retro_pabe_3653, retro_pabe_3739,
|
Pan troglodytes | ENSPTRG00000014888 | 1 retrocopy |