Parental gene: | RBPJ, ENSG00000168214 |
| Aliases: | RBPJ, AOS3, CBF1, IGKJRB, IGKJRB1, KBF2, RBP-J, RBPJK, RBPSUH, SUH, csl |
| Description: | recombination signal binding protein for immunoglobulin kappa J region [Source:HGNC Symbol;Acc:5724] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 4:26165076..26436541(+) |
>ENSG00000168214
ATGGACCACACGGAGGGCTCGCCCGCGGAGGAGCCGCCTGCGCATGCTCCATCGCCTGGGAAATTTGGTGAGCGGCCTCC
ACCTAAACGACTTACTAGGGAAGCTATGCGAAATTATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCATGCAA
AAGTTGCACAGAAGTCATATGGAAATGAAAAAAGGTTTTTTTGCCCACCTCCTTGTGTATATCTTATGGGCAGTGGATGG
AAGAAAAAAAAAGAACAAATGGAACGCGATGGTTGTTCTGAACAAGAGTCTCAACCGTGTGCATTTATTGGGATAGGAAA
TAGTGACCAAGAAATGCAGCAGCTAAACTTGGAAGGAAAGAACTATTGCACAGCCAAAACATTGTATATATCTGACTCAG
ACAAGCGAAAGCACTTCATGTTGTCTGTAAAGATGTTCTATGGCAACAGTGATGACATTGGTGTGTTCCTCAGCAAGCGG
ATAAAAGTCATCTCCAAACCTTCCAAAAAGAAGCAGTCATTGAAAAATGCTGACTTATGCATTGCCTCAGGAACAAAGGT
GGCTCTGTTTAATCGACTACGATCCCAGACAGTTAGTACCAGATACTTGCATGTAGAAGGAGGTAATTTTCATGCCAGTT
CACAGCAGTGGGGAGCCTTTTTTATTCATCTCTTGGATGATGATGAATCAGAAGGAGAAGAATTCACAGTCCGAGATGGC
TACATCCATTATGGACAAACAGTCAAACTTGTGTGCTCAGTTACTGGCATGGCACTCCCAAGATTGATAATTAGGAAAGT
TGATAAGCAGACCGCATTATTGGATGCAGATGATCCTGTGTCACAACTCCATAAATGTGCATTTTACCTTAAGGATACAG
AAAGAATGTATTTGTGCCTTTCTCAAGAAAGAATAATTCAATTTCAGGCCACTCCATGTCCAAAAGAACCAAATAAAGAG
ATGATAAATGATGGCGCTTCCTGGACAATCATTAGCACAGATAAGGCAGAGTATACATTTTATGAGGGAATGGGCCCTGT
CCTTGCCCCAGTCACTCCTGTGCCTGTGGTAGAGAGCCTTCAGTTGAATGGCGGTGGGGACGTAGCAATGCTTGAACTTA
CAGGACAGAATTTCACTCCAAATTTACGAGTGTGGTTTGGGGATGTAGAAGCTGAAACTATGTACAGGTGTGGAGAGAGT
ATGCTCTGTGTCGTCCCAGACATTTCTGCATTCCGAGAAGGTTGGAGATGGGTCCGGCAACCAGTCCAGGTTCCAGTAAC
TTTGGTCCGAAATGATGGAATCATTTATTCCACCAGCCTTACCTTTACCTACACACCAGAACCAGGGCCGCGGCCACATT
GCAGTGCAGCAGGAGCAATCCTTCGAGCCAATTCAAGCCAGGTGCCCCCTAACGAATCAAACACAAACAGCGAGGGAAGT
TACACAAACGCCAGCACAAATTCAACCAGTGTCACATCATCTACAGCCACAGTGGTATCCTAA
ATGGACCACACGGAGGGCTCGCCCGCGGAGGAGCCGCCTGCGCATGCTCCATCGCCTGGGAAATTTGGTGAGCGGCCTCC
ACCTAAACGACTTACTAGGGAAGCTATGCGAAATTATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCATGCAA
AAGTTGCACAGAAGTCATATGGAAATGAAAAAAGGTTTTTTTGCCCACCTCCTTGTGTATATCTTATGGGCAGTGGATGG
AAGAAAAAAAAAGAACAAATGGAACGCGATGGTTGTTCTGAACAAGAGTCTCAACCGTGTGCATTTATTGGGATAGGAAA
TAGTGACCAAGAAATGCAGCAGCTAAACTTGGAAGGAAAGAACTATTGCACAGCCAAAACATTGTATATATCTGACTCAG
ACAAGCGAAAGCACTTCATGTTGTCTGTAAAGATGTTCTATGGCAACAGTGATGACATTGGTGTGTTCCTCAGCAAGCGG
ATAAAAGTCATCTCCAAACCTTCCAAAAAGAAGCAGTCATTGAAAAATGCTGACTTATGCATTGCCTCAGGAACAAAGGT
GGCTCTGTTTAATCGACTACGATCCCAGACAGTTAGTACCAGATACTTGCATGTAGAAGGAGGTAATTTTCATGCCAGTT
CACAGCAGTGGGGAGCCTTTTTTATTCATCTCTTGGATGATGATGAATCAGAAGGAGAAGAATTCACAGTCCGAGATGGC
TACATCCATTATGGACAAACAGTCAAACTTGTGTGCTCAGTTACTGGCATGGCACTCCCAAGATTGATAATTAGGAAAGT
TGATAAGCAGACCGCATTATTGGATGCAGATGATCCTGTGTCACAACTCCATAAATGTGCATTTTACCTTAAGGATACAG
AAAGAATGTATTTGTGCCTTTCTCAAGAAAGAATAATTCAATTTCAGGCCACTCCATGTCCAAAAGAACCAAATAAAGAG
ATGATAAATGATGGCGCTTCCTGGACAATCATTAGCACAGATAAGGCAGAGTATACATTTTATGAGGGAATGGGCCCTGT
CCTTGCCCCAGTCACTCCTGTGCCTGTGGTAGAGAGCCTTCAGTTGAATGGCGGTGGGGACGTAGCAATGCTTGAACTTA
CAGGACAGAATTTCACTCCAAATTTACGAGTGTGGTTTGGGGATGTAGAAGCTGAAACTATGTACAGGTGTGGAGAGAGT
ATGCTCTGTGTCGTCCCAGACATTTCTGCATTCCGAGAAGGTTGGAGATGGGTCCGGCAACCAGTCCAGGTTCCAGTAAC
TTTGGTCCGAAATGATGGAATCATTTATTCCACCAGCCTTACCTTTACCTACACACCAGAACCAGGGCCGCGGCCACATT
GCAGTGCAGCAGGAGCAATCCTTCGAGCCAATTCAAGCCAGGTGCCCCCTAACGAATCAAACACAAACAGCGAGGGAAGT
TACACAAACGCCAGCACAAATTCAACCAGTGTCACATCATCTACAGCCACAGTGGTATCCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 31 .71 RPM |
| bodymap2_lung | 162 .04 RPM |
| bodymap2_breast | 202 .51 RPM |
| bodymap2_adipose | 243 .92 RPM |
| bodymap2_adrenal | 167 .50 RPM |
| bodymap2_skeletal_muscle | 91 .59 RPM |
| bodymap2_thyroid | 112 .95 RPM |
| bodymap2_prostate | 214 .93 RPM |
| bodymap2_colon | 252 .87 RPM |
| bodymap2_testis | 219 .11 RPM |
| bodymap2_brain | 162 .25 RPM |
| bodymap2_heart | 79 .27 RPM |
| bodymap2_white_blood_cells | 223 .63 RPM |
| bodymap2_lymph_node | 172 .28 RPM |
| bodymap2_ovary | 209 .71 RPM |
| bodymap2_kidney | 100 .20 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000003602 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000001582 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000004582 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000039191 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000016895 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000013449 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000015968 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000009022 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_4169 | 88.01 | 57.42 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_4171 | 84.63 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_4173 | 84.25 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_4174 | 85.25 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_4256 | 84.46 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_4316 | 84.63 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000168214 retrocopies