Parental gene:

RBPJ, ENSOCUG00000013449

Aliases:None
Description:recombination signal binding protein for immunoglobulin kappa J region [Source:HGNC Symbol;Acc:5724]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:2:16736627..16802766(+)


>ENSOCUG00000013449
ATGGCGTGGATTAAAAGGAAATTTGGTGAGCGACCGCCACCCAAGCGACTCACTAGGGAAGCTATGCGAAACTATTTAAA
AGAGCGAGGGGATCAAACAGTACTTATTCTTCATGCAAAAGTTGCACAGAAGTCATATGGAAATGAGAAAAGGTTTTTTT
GCCCTCCTCCTTGTGTGTATCTTATGGGCAGTGGATGGAAGAAAAAAAAAGAACAAATGGAACGTGATGGTTGTTCTGAA
CAGGAGTCGCAACCTTGTGCATTTATTGGGATAGGAAATAGTGACCAAGAAATGCAGCAGCTGAACTTGGAAGGAAAGAA
CTATTGCACAGCCAAAACATTGTACATATCTGATTCAGACAAGAGAAAACACTTCATGTTGTCTGTCAAGATGTTCTATG
GCAACAGTGATGACATCGGTGTGTTCCTCAGCAAGCGGATAAAAGTCATCTCCAAGCCATCCAAAAAGAAGCAGTCGTTG
AAAAATGCAGACTTGTGCATTGCCTCAGGAACAAAGGTGGCTCTGTTTAATCGCCTTCGGTCCCAGACAGTCAGCACCAG
ATACTTGCATGTAGAAGGAGGTAACTTCCACGCCAGTTCTCAGCAGTGGGGAGCATTTTATATTCATCTCCCCAATGTAG
TGGATGACGATGAATCAGAAGGAGAAGAATTTACAGTCCGAGATGGCTACATCCATTATGGACAGACGGTCAAGCTCGTG
TGCTCAGTTACTGGCATGGCACTCCCAAGATTGATAATTAGGAAAGTTGACAAGCAGACGGCATTGCTGGATGCGGACGA
TCCTGTGTCTCAACTCCATAAATGTGCATTTTACCTTAAGGATACGGAAAGAATGTACTTGTGCCTTTCTCAAGAAAGAA
TAATCCAGTTTCAGGCCACTCCATGCCCAAAAGAACCAAATAAAGAAATGATCAATGATGGCGCTTCCTGGACAATCATC
AGCACAGACAAGGCAGAGTATACCTTTTACGAGGGCATGGGCCCTGTCCTGGCCCCAGTCACCCCGGTGCCTGTCGTAGA
AAGTCTTCAGCTGAACGGCGGCGGAGACGTAGCAATGCTTGAACTCACAGGCCAGAATTTCACTCCAAATTTACGAGTGT
GGTTTGGGGATGTAGAAGCGGAAACCATGTACAGGTGTGGGGAGAGCATGCTCTGTGTCGTCCCAGACATTTCTGCATTC
CGAGAAGGCTGGCGATGGGTCCGGCAGCCAGTCCAGGTTCCAGTAACTTTGGTCCGGAACGATGGAATCATTTATTCCAC
CAGCCTTACCTTTACCTACACGCCAGAGCCAGGGCCGCGGCCTCACTGCAGCGCGGCGGGAGCCATCCTCCGGGCCAGCT
CCAGCCAAGTGCCCCCCAGCGAGTCCAACACAAACAGCGAGGGAAGTTACACAAACGCCAGCACCAACGCGGCCAGCGTC
ACATCGGCAGCCACCGTGGTGTCCTAA

Library Parental gene expression (RPM)
SRP017611_brain 38 .85 RPM
SRP017611_kidney 32 .43 RPM
SRP017611_liver 15 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003602 ortholog_one2one 1 retrogene
retro_btau_1507,
Choloepus hoffmanni ENSCHOG00000001582 ortholog_one2one 4 retrogenes
retro_chof_1172, retro_chof_1278, retro_chof_2449, retro_chof_371,
Homo sapiens ENSG00000168214 ortholog_one2one 6 retrogenes
retro_hsap_4169, retro_hsap_4171, retro_hsap_4173, retro_hsap_4174, retro_hsap_4256, retro_hsap_4316,
Gorilla gorilla ENSGGOG00000004582 ortholog_one2one 1 retrogene
retro_ggor_2853,
Mus musculus ENSMUSG00000039191 ortholog_one2one 2 retrogenes
retro_mmus_2348, retro_mmus_2819,
Nomascus leucogenys ENSNLEG00000016895 ortholog_one2one 1 retrogene
retro_nleu_2305,
Pan troglodytes ENSPTRG00000015968 ortholog_one2one 1 retrogene
retro_ptro_2829,
Tursiops truncatus ENSTTRG00000009022 ortholog_one2one 2 retrogenes
retro_ttru_1151, retro_ttru_1593,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1445 79.73 58.81
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Download FASTA sequences of all ENSOCUG00000013449 retrocopies