Parental gene: | DDX18, ENSGGOG00000028420 |
| Aliases: | None |
| Description: | None |
| Organism: | Gorilla (Gorilla gorilla) |
| Coordinates: | 2b:4524038..4541744(+) |
>ENSGGOG00000028420
ATGTCTCACCTGCCGATGAAACTCCTGCGTAAGAAGATCGAGAAGCGGAACCTCAAATTGCGGCAGCGGAACCTAAAGTT
GCAGGGGGCCTCAAATCTGACCCTATCAGAAACTCAAAATGGAGATGTATCTGAAGAAACAATGGGAAGTAGAAAGGTTA
AAAAATCAAAACAAAAGCCCATGAATGTGGGCTTATCAGAAACTCAAAATGGAGATGTGTCTCAAGAAGCAGTGGAAAAT
ATAAAAGTTAAAAAGTCTCCCCAGAAATCCACTGTATTAACCAATGAAGAAGCAGCAATGCAGTCTTCCAATTCAGAATC
AAAAAAGAAAAAGAAGAAAAAGAGAAAAATGGTGAATGATGCTGAGCCTGCCAAAGATACGAAAAAAGCAAAAACTGAAA
ACAAAGGGAAATCTGAAGAAGAAAGTGCCGAGACTCCTAAAGAAACAGAAAATAATGTGGAGAAGCCAGATAATGATGAA
GATGAGAGTGAGGTGCCCAGTCTGCCCCTGGGACTGACAGGAGCTTTTGAGGATACTTCGTTTGCTTCTCTATGTAATCT
TGTCAATGAAAACACTCTGAAGGCAATAAAAGAAATGGGTTTTACAAACATGACTGAAATTCAGCATAAAAGTATCAGAC
CACTTCTGGAAGGCAGGGATCTTCTAGCAGCTGCAAAAACAGGCAGTGGTAAAACCCTGGCTTTTCTCATCCCTGCAGTT
GAACTCATTGTTAAGTTAAGGTTCATGCCCAGGAATGGAACAGGAGTCCTTATTCTCTCACCTACTAGAGAACTAGCCAT
GCAAACTTTTGGTGTTCTTAAGGAGCTAATGACTCACCACGTGCATACCTATGGTTTGATAATGGGTGGCAGTAACAGAT
CTGCTGAAGCACAGAAACTTGCTAATGGGATCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCATATGCAGAAT
ACCCCAGGATTTATGTATAAAAACCTGCAGTGTCTGGTTATTGATGAAGCTGATCGTATCTTGGATGTGGGGTTTGAAGA
GGAATTAAAGCAAATTATTAAACTTTTGCCAACACGTAGACAGACTATGCTCTTTTCTGCCACCCAAACTCGAAAAGTTG
AAGACCTGGCAAGGATTTCTCTAAAAAAGGAGCCATTGTATGTTGGCGTTGATGATGATAAAGCGAATGCAACAGTGGAT
GGTCTTGAACAGGGATACGTTGTTTGTCCTTCTGAAAAGAGATTCCTTCTGCTCTTTACATTCCTTAAGAAGAACCGAAA
GAAGAAGCTTATGGTCTTCTTTTCATCTTGTATGTCTGTGAAATACCACTATGAGTTGCTGAACTACATTGATTTGCCCG
TCTTGGCCATTCATGGAAAGCAAAAGCAAAATAAGCGAACAACCACATTCTTCCAGTTCTGCAATGCAGATTCGGGAACA
CTATTGTGTACGGATGTGGCAGCGAGAGGACTAGACATTCCTGAAGTCGACTGGATTGTTCAGTATGACCCTCCGGATGA
CCCTAAGGAATATATTCATCGTGTGGGTAGAACAGCCAGAGGCCTAAATGGGAGAGGGCATGCCTTGCTCATTTTGCGCC
CAGAAGAATTGGGTTTTCTTCGCTACTTGAAACAATCCAAGGTTCCATTAAGTGAGTTTGACTTTTCCTGGTCTAAAATT
TCTGACATTCAGTCTCAGCTTGAGAAATTGATTGAAAAGAATTACTTTCTTCATAAGTCAGCCCAGGAAGCATATAAGTC
ATACATACGAGCCTATGATTCCCATTCTCTGAAACAGATCTTTAATGTTAATAACTTAAATTTGGCTCAGGTTGCTCTGT
CATTTGGTTTCAAGGTGCCTCCCTTCGTTGATCTGAACGTCAACAGTAATGAAGGCAAGCAGAAAAAGCGAGGAGGTGGT
GGTGGATTTGGCTACCAGAAAACCAAGAAAGTTGAGAAATCCAAAATCTTTAAACACATTAGCAGGAAATCATCCGACAG
CAGGCAGTTCTCTCACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 22 .92 RPM |
| SRP007412_cerebellum | 26 .32 RPM |
| SRP007412_heart | 4 .88 RPM |
| SRP007412_kidney | 34 .92 RPM |
| SRP007412_liver | 19 .84 RPM |
| SRP007412_testis | 43 .82 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000004950 | possible_ortholog | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000017166 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000088205 | ortholog_one2one | 6 retrogenes | |
| Microcebus murinus | ENSMICG00000017590 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000017607 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000021343 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000000533 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000001674 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011769 | ortholog_one2one | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000012796 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000012391 | ortholog_one2one | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ggor_535 | 87.78 | 80.06 | Please wait, loading  |
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| 2. | retro_ggor_1201 | 80.72 | 89.58 | Please wait, loading |
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| 3. | retro_ggor_2189 | 87.31 | 58.48 | Please wait, loading |
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| 4. | retro_ggor_2402 | 88.38 | 61.46 | Please wait, loading |
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Download FASTA sequences of all ENSGGOG00000028420 retrocopies