Parental gene: | DDX18, ENSPTRG00000012391 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 2B:118359328..118377007(+) |
>ENSPTRG00000012391
ATGTCTCACCTGCCGATGAAACTCCTGCGTAAGAAGATCGAGAAGCGGAACCTCAAATTGCGGCAGCGGAACCTAAAGTT
GCAGGGGGCCTCAAATCTGACCCTATCGGAAACTCAAAATGGAGATGTATCTGAAGAAACAATGGGAAGTAGAAAGGTTA
AAAAATCAAAACAAAAGCCCATGAATGTGGGCTTATCAGAAACTCAAAATGGAGACGTGTCTCAAGAGGCAGTGGAAAAT
GTAAAAGTTAAAAAGTCTCCCCAGAAATCCAGTGTATTAACCAATGGAGAAGCAGCAATGCAGTCTTCCAATTCAGAATC
AAAAAAGAAAAAGAAGAAAAAGAGAAAAATGGTGAATGATGCTGAGCCTGATACGAAAAAAGCAAAAACTGAAAACAAAG
GGAAATCTGAAGAAGAAAGTGCCGAGACTCCTAAAGAAACAGAAAATAATGTGGATAAGCCAGATAATGATGAAGATGAG
AGTGAGGTGCCCAATCTGCCCCTGGGACTGACAGGAGCTTTTGAGGATACTTCGTTTGCTTCTCTATGTAATCTTGTCAA
TGAAAACACTCTGAAGGCAATAAAAGAAATGGGTTTTACAAACATGACTGAAATTCAGCATAAAAGTATCAGACCACTTC
TGGAAGGCAGGGATCTTCTAGCAGCTGCAAAAACAGGCAGTGGTAAAACCCTGGCTTTTCTCATCCCTGCAGTTGAACTC
ATTGTTAAGTTAAGGTTCATGCCCAGGAATGGAACAGGAGTCCTTATTCTCTCACCTACTAGAGAACTAGCCATGCAAAC
TTTTGGTGTTCTTAAGGAGCTGATGACTCACCACGTGCATACCTATGGCTTGATAATGGGTGGCAGTAACAGATCTGCTG
AAGCACAGAAACTTGCTAATGGGATCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCATATGCAGAATACCCCA
GGATTTATGTATAAAAACCTGCAGTGTCTGGTTATTGATGAAGCTGATCGTATCTTGGATGTGGGGTTTGAAGAGGAATT
AAAGCAAATTATTAAACTTTTGCCAACACGTAGACAGACTATGCTCTTTTCTGCCACCCAAACTCGAAAAGTTGAAGACC
TGGCAAGGATTTCTCTGAAAAAGGAGCCATTGTATGTTGGCGTTGATGATGATAAAGCGAATGCAACAGTGGATGGTCTT
GAACAGGGATATGTTGTTTGTCCTTCTGAAAAGAGATTCCTTCTGCTCTTTACATTCCTTAAGAAGAACCGAAAGAAGAA
GCTTATGGTCTTCTTTTCATCTTGTATGTCTGTGAAATACCACTATGAGTTGCTGAACTACATTGATTTGCCCGTCTTGG
CCATTCATGGAAAGCAAAAGCAAAATAAGCGTACAACCACATTCTTCCAGTTCTGCAATGCAGATTCGGGAACACTATTG
TGTACGGATGTGGCAGCGAGAGGACTAGACATTCCTGAAGTCGACTGGATTGTTCAGTATGACCCTCCGGATGACCCTAA
GGAATATATTCATCGTGTGGGTAGAACAGCCAGAGGCCTAAATGGGAGAGGGCATGCCTTGCTCATTTTGCGCCCAGAAG
AATTGGGTTTTCTTCGCTACTTGAAACAATCCAAGGTTCCATTAAGTGAGTTTGACTTTTCCTGGTCTAAGATTTCTGAC
ATTCAGTCTCAGCTTGAGAAATTGATTGAAAAGAATTACTTTCTTCATAAGTCAGCCCAGGAAGCATATAAGTCATACAT
ACGAGCCTATGATTCCCATTCTCTGAAACAGATCTTTAATGTTAATAACCTAAATTTGCCTCAGGTTGCTCTGTCATTTG
GTTTCAAGGTGCCTCCCTTCGTTGATCTGAACGTCAACAGTAATGAAGGCAAGCAGAAAAAGCGAGGAGGTGGTGGTGGA
TTTGGCTACCAGAAAACCAAGAAAGTTGAGAAATCCAAAATCTTTAAACACATTAGCAAGAAATCATCCGACAGCAGGCA
GTTCTCTCACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 18 .52 RPM |
| SRP007412_cerebellum | 42 .48 RPM |
| SRP007412_heart | 23 .87 RPM |
| SRP007412_kidney | 31 .98 RPM |
| SRP007412_liver | 26 .09 RPM |
| SRP007412_testis | 36 .88 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Echinops telfairi | ENSETEG00000017166 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000088205 | ortholog_one2one | 6 retrogenes | |
| Gorilla gorilla | ENSGGOG00000028420 | ortholog_one2one | 4 retrogenes | |
| Microcebus murinus | ENSMICG00000017590 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000017607 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000021343 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000000533 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011769 | ortholog_one2one | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000012796 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_448 | 85.61 | 82.54 | Please wait, loading  |
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| 2. | retro_ptro_933 | 90.02 | 80.15 | Please wait, loading |
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| 3. | retro_ptro_1064 | 81.16 | 89.55 | Please wait, loading |
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| 4. | retro_ptro_2174 | 87.21 | 58.21 | Please wait, loading |
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| 5. | retro_ptro_2419 | 89.10 | 61.64 | Please wait, loading |
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Download FASTA sequences of all ENSPTRG00000012391 retrocopies