Parental gene:

MRPS18C, ENSMMUG00000015353

Aliases:None
Description:28S ribosomal protein S18c, mitochondrial [Source:RefSeq peptide;Acc:NP_001253055]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:5:46077642..46083682(-)


>ENSMMUG00000015353
ATGGCAGCTATGGTTGCTGTTTGCGGTGGTCTAGGGAGGAAGAAGTTGACACGCCTGGTAACGGCTGCTGTCAGCCTTAC
ACATCTCGGGACTCAAACGGTGCTTTGGAGAAGAGGTTGTTCACAATATAAACAGGTATCCAGCAACGAGGACCTGCCCA
TTACAATGGAAAATCCTTATAAAGAACCTCTTAAGAAATGTATCTTGTGTGGAAAGCGTGTAGATTATAAGAATGTACAG
CTTTTGTCCCAGTTTGTTTCTCCATTTACTGGATGCATTTATGGAAGGCACATTACAGGTCTTTGTGGGAAGAAACAGAA
AGAAATCACAAAAGCAATTAAGAGAGCTCAAATACTGGGGTTTATGCCAGTTACATACAAGGATCCTGCATATCTCAAGG
ACCCTAAAGTTTGTAACATCAGATATCGAGAATAA

Library Parental gene expression (RPM)
SRP007412_brain 11 .21 RPM
SRP007412_brain_prefrontal_cortex 6 .03 RPM
SRP007412_cerebellum 10 .98 RPM
SRP007412_heart 10 .72 RPM
SRP007412_kidney 13 .15 RPM
SRP007412_liver 10 .33 RPM
SRP007412_testis 13 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018155 ortholog_one2one 3 retrogenes
retro_btau_1386, retro_btau_309, retro_btau_502,
Callithrix jacchus ENSCJAG00000005286 ortholog_one2one 3 retrogenes
retro_cjac_1419, retro_cjac_234, retro_cjac_3970,
Cavia porcellus ENSCPOG00000009198 ortholog_one2one 1 retrogene
retro_cpor_178,
Dasypus novemcinctus ENSDNOG00000018326 ortholog_one2one 2 retrogenes
retro_dnov_1030, retro_dnov_152,
Macropus eugenii ENSMEUG00000010972 ortholog_one2one 2 retrogenes
retro_meug_104, retro_meug_1113,
Myotis lucifugus ENSMLUG00000017057 ortholog_one2one 1 retrogene
retro_mluc_2360,
Mus musculus ENSMUSG00000016833 ortholog_one2one 2 retrogenes
retro_mmus_1546, retro_mmus_2127,
Nomascus leucogenys ENSNLEG00000009119 possible_ortholog 4 retrogenes
retro_nleu_111, retro_nleu_1614, retro_nleu_2722, retro_nleu_3010,
Ochotona princeps ENSOPRG00000004113 ortholog_one2one 2 retrogenes
retro_opri_1041, retro_opri_966,
Pongo abelii ENSPPYG00000025867 possible_ortholog 2 retrogenes
retro_pabe_1276, retro_pabe_70,
Pteropus vampyrus ENSPVAG00000006439 ortholog_one2one 2 retrogenes
retro_pvam_1326, retro_pvam_1412,
Rattus norvegicus ENSRNOG00000002178 ortholog_one2one 3 retrogenes
retro_rnor_2264, retro_rnor_2265, retro_rnor_477,
Sarcophilus harrisii ENSSHAG00000007084 ortholog_one2one 1 retrogene
retro_shar_718,
Ictidomys tridecemlineatus ENSSTOG00000007989 ortholog_one2one 1 retrogene
retro_itri_1231,
Tupaia belangeri ENSTBEG00000012505 ortholog_one2one 3 retrogenes
retro_tbel_1755, retro_tbel_4724, retro_tbel_508,
Tarsius syrichta ENSTSYG00000012924 ortholog_one2one 1 retrogene
retro_tsyr_649,
Tursiops truncatus ENSTTRG00000004897 ortholog_one2one 2 retrogenes
retro_ttru_144, retro_ttru_1721,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_655 71.43 52.08
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2. retro_mmul_793 78.21 53.47
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3. retro_mmul_2203 81.94 100.00
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4. retro_mmul_2494 88.81 98.61
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Download FASTA sequences of all ENSMMUG00000015353 retrocopies