Parental gene:

DEPDC1, ENSMMUG00000017766

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:1:71265269..71287752(-)


>ENSMMUG00000017766
ATGGAGAGTCGGGGTGTGCCTCCCGGGCCTTATCGGGCCACCAAGCTGTGGAATGAAGTTACCACATCTTTTCGAGCAGG
AATGCCTCTAAGAAAACACAGACAGCACTTTAAAAAATATGGTAATTGTTTCACAGCAGGAGAAGCAGTGGATTGGCTTT
ATGATCTATTAAGAAATAATAGCAATTTTGGTCCTGAAGTTACAAGGCAACAGACTATCCAACTGTTGAGGAAATTTCTT
AAGAATCATGTAATTGAAGATATCAAAGGGAGGTGGGGATCAGAAAATGTTGATGATAACAACCAGCTCTTCAGATTTCC
TGCAACTTCGCCACTTAAAACTCCACCACGAAGGCATCCAGAGTTGCAAAGAAACAACATAGAGAACTTTTCCAAAGATA
AAGATAGTATTTTTAAATTACGAAACTTATCTCGTAGAACTCCTAAAAAGCATGGATTACATTTATCTCAGGAAAAGGCC
GAGAAAATAAAGCATAAAATAATCAATGAAGATCAAGAAAATGCAGCTGATAATAGAGAACTAAGCCAGGAAGATGTTGA
AGAAGTTTGGAAATGTGTTATTCTGATCTACCTGCAAACCATTTTAGGTGTGCCATTCCTAGAAGAAGTCATAAATCCAA
AACAAGTAATTCCCCAATATATAATGTACAACATGGCTAATACAAGTAAACATGGAGTAGTTATACTACAAAACAAATCA
GATGACCTCCCTCACTGGGTATTATCTGCCATGAAGTGCCTAGCAAATTGGCCAAGAAGCAATGATATGAATAATCCAAC
TTATGTTGGATTTGAACGAGATGTATTCAGAACAATCGCAGATTATTTTCTAGATCTCCCTGAACCTCTACTTACTTTTG
AATATTACGAGTTATTTGTGAACATTTTGGTTGTTTGTGGCTACGTCACAGTTTCAGATAGATCCAGTGGGATTCATAAA
ATCCAAGATGATCTACAGTCTTCAAAATTCCTTCACTTAAACAATTTGAATTCCTTCAAATCAACTGAGTGCCTTCTTCT
CAGTCTGCTTCATAGAGAAAAAAACAAAGAAGAATCAGATTCTACTGAGAGACTACAGATAAGCAATCCAGGATTTCAAG
AAAGATGTGCTAAGAAAACGCAGCTAGTTAATTTAAGAAACAGAAGAGTGAGTGCTAATGACATAATGGGAGGAAGTTGT
CATAATTTAATAGGGTTAAGCAGTATGCATGATCTAGCCTCTAACAACAAACCAAGGTGCTGTTCTTTGGAAGGAATTGT
AGATGTGTCAGGGAATTCAAGTAAAGAGGCATCCAGTGTCTTTCATCAATCTTTTCCGAACATAGAAGGACAAAATAATA
AACTGTTTTTAGAGTCTAAGCCTAAACAGGAATTCCTGTTGAATCTTCATTCAGAGGAAAATACTCAAAAGCCATTCAGT
GCTGGTTTTAAGAGAACCTCTACTTTGACTGTTCAAGACCAAGAGGAGTTGTGTAATGGGAAATGCAAGTCAAAAGAGCT
TTGTAGGTCTCAGAGTTTGCTTTTAAGAAGTAGTACAAGAAGGAATAGTTATATCAATACACCAGTGGCTGAAATTATCA
TGAAACCAAATGTTGGACAAGGCAGCACAAGTGTGCAAACAGCTATGGAAGGTGAACTTGGAGAGTCTAGTGCCACAATC
AATAAAAGACTCTGCAAAAGTACAATAGAACTTTCAGAAAATTCTTTACTTCCAGCTTCTTCTATGTTGACTGGCACACA
AAGTTTGCTGCAACCTCATTTAGAGAGGGTTGCCATCAATGCTCTACAGTTATGTTGTTTGTTACTTCCCCCACCAAATC
GTAGAAAGCTGCAACTTTTAATGCGTATGATTTCCCGAATGAGTCAAAATGTTGATATGCCCAAACTTCATGATGCAATG
GGTACGAGATCACTGATGATACATACCTTTTCTCGATGTGTGTTATGCTGTGCTGAAGAAGTGGATCTTGATGAGCTTCT
TGCTGGAAGATTAGTTTCTTTCTTAATGGATCATCATCAGGAAATTCTTCAAGTACCCTCTTACTTACAGACTGCAGTGG
AAAAACATCTTGACTACTTAAAAAAGGGACATATTGAAAATCCTGGAGATGGACTATTTGCTCCTTTGCCAACTTACTCA
TACTGTAAGCAGATTAGTGCTCAGGAGTTTGATGAGCAAAAAGTTTCTACCTCTCAAGCTGCAATTGCAGAACTTTTAGA
AAATATTATTAAAAACAGGAGTTTACCTCTAAAAGAGAAAAGGAAAAAACTAAAACAGTTTCAGAAGGAATATCCCTTGA
TATATCAGAAAAGATTTCCAACCACGGAGAGTGAAGCAGCACTTTTTGGTGACAAACCTACAATCAAGCAACCAATGCTG
ATTTTAAGAAAACCAAAGTTCCGTAGTCTAAGATACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .08 RPM
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .06 RPM
SRP007412_kidney 0 .23 RPM
SRP007412_liver 0 .04 RPM
SRP007412_testis 16 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000013839 ortholog_one2one 1 retrogene
retro_cpor_735,
Homo sapiens ENSG00000024526 ortholog_one2one 2 retrogenes
retro_hsap_1545, retro_hsap_4206,
Gorilla gorilla ENSGGOG00000016316 ortholog_one2one 1 retrogene
retro_ggor_1176,
Mus musculus ENSMUSG00000028175 ortholog_one2one 1 retrogene
retro_mmus_3028,
Nomascus leucogenys ENSNLEG00000009334 ortholog_one2one 1 retrogene
retro_nleu_2931,
Otolemur garnettii ENSOGAG00000000934 ortholog_one2one 1 retrogene
retro_ogar_1907,
Pongo abelii ENSPPYG00000001248 ortholog_one2one 1 retrogene
retro_pabe_3441,
Pan troglodytes ENSPTRG00000000847 ortholog_one2one 2 retrogenes
retro_ptro_1041, retro_ptro_2855,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1176 89.13 56.53
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Download FASTA sequences of all ENSMMUG00000017766 retrocopies