Parental gene:

DEPDC1, ENSPPYG00000001248

Aliases:None
Description:DEP domain containing 1 [Source:HGNC Symbol;Acc:22949]
Organism:Orangutan (Pongo abelii)
Coordinates:1:160897717..160917545(+)


>ENSPPYG00000001248
ATGGAGAGTCGGGGTGTGCCTCCCGGGCCTTATCGGGCCACCAAGCTGTGGAATGAAGTTACCACATCTTTTCGAGCAGG
AATGCCTCTGAGAAAACACAGACAACACTTTAAAAAATATGGCAATTGTTTCACAGCAGGAGAAGCAGTGGATTGGCTTT
ATGACCTATTAAGAAATAATAGCAATTTTGGTCCTGAAGTTACAAGGCAACAGACTATCCAACTGTTGAGGAAATTTCTT
AAGAATCATGTAATTGAAGATATCAAAGGGAGGTGGGGATCAGAAAATGTTGATGATAACAACCAGCTCTTCAGATTTCC
TGCAACTTCGCCACTTAAAACTCTACCACGAAGGCATCTAGAATTGAGAAAAAACAACGTGGAGAACTTTTCCAAAGACA
AAGATAGCATTTTTAAATTACGAAACTTATCTCGTAGAACTCCTAAAAGGCATGGATTACATTTATCTCAGGAAAATGGC
GAGAAAATAAAGCATGAAATAATCAATGAAGATCAAGAAAATGCAATTGATAATAGAGAACTAAGCCAGGAAGATGTTGA
AGAAGTTTGGAGATATGTTATTCTGATCTACCTGCAAACCATTTTAGGTGTGCCATCCCTAGAAGAAGTCATAAATCCAA
AACAAGTAATTCCCCAATATATAATGTACAACATGGCCAATACAAGTAAACATGGAGTAGTTATACTACAAAACAAATCA
GATGACCTCCCTCACTGGGTATTATCTGCCATGAAGTGCCTAGCAAATTGGCCAAGAAGCAATGATATGAATAATCCAAC
TTATGCTGGATTTGAACGAGATGTATTCAGAACAATTGCAGATTATTTTCTAGATCTCCCTGAACCTCTACTTACTTTTG
AATATTACGAATTATTTGTAAACATTCTGGGTTTGCTGCAACCTCATTTAGAGAGGGTTGCCATCGACGCTCTACAGTTA
TGTTGTTTGTTACTTCCCCCACCAAATCGTAGAAAGCTTCAACTTTTAATGCGTATGATTTCCCGAATGAGTCAAAATGT
TGATATGCCCAAACTTCATGATGCAATGGGTATGAGATCACTGATGATACATACCTTTTCTCGATGTGTGTTATGCTGTG
CTGAAGAAGTGGATCTTGATGAGCTTCTTGCTGGAAGATTAGTTTCTTTCTTAATGGATCATCATCAGGAAATTCTTCAA
GTACCCTCTTACTTACAGATTGCAGTGGAAAAACATCTTGACTACTTAAAAAAGGGACATATTGAAAATCCTGGAGATGG
TCTATTTGCTCCTTTGCCAACTTACTCATACTGTAAGCAGATTAGTGCTCAGGAGTTTGATGAGCAAAAAGTTTCTACCT
CTCAAGCTGCAATTGCAGAACTTTTAGAAAATATTATTAAAAACAGGAGTTTACCTCTAAAGGAGAAGAGAAAAAAACTA
AAACAGTTTCAGAAGGAATATCCTTTGATATATCAGAAAAGATTTCCAACCATGGAGAGTGAAGCAGCACTTTTTGGTGA
CAAACCTACAATCAAGCAACCAATGCTGATTTTAAGAAAACCAAAGTTCCGTAGTCTAAGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .22 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .33 RPM
SRP007412_kidney 0 .03 RPM
SRP007412_liver 0 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000013839 ortholog_one2one 1 retrogene
retro_cpor_735,
Homo sapiens ENSG00000024526 ortholog_one2one 2 retrogenes
retro_hsap_1545, retro_hsap_4206,
Gorilla gorilla ENSGGOG00000016316 ortholog_one2one 1 retrogene
retro_ggor_1176,
Macaca mulatta ENSMMUG00000017766 ortholog_one2one 1 retrogene
retro_mmul_1176,
Mus musculus ENSMUSG00000028175 ortholog_one2one 1 retrogene
retro_mmus_3028,
Nomascus leucogenys ENSNLEG00000009334 ortholog_one2one 1 retrogene
retro_nleu_2931,
Otolemur garnettii ENSOGAG00000000934 ortholog_one2one 1 retrogene
retro_ogar_1907,
Pan troglodytes ENSPTRG00000000847 ortholog_one2one 2 retrogenes
retro_ptro_1041, retro_ptro_2855,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3441 88.28 54.65
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Download FASTA sequences of all ENSPPYG00000001248 retrocopies