Parental gene:

Pdpn, ENSMUSG00000028583

Aliases:Pdpn, Gp38, OTS-8, RANDAM-2, T1-alpha, T1a, T1alpha
Description:podoplanin [Source:MGI Symbol;Acc:MGI:103098]
Organism:Mouse (Mus musculus)
Coordinates:4:143267430..143299564(-)


>ENSMUSG00000028583
ATGTGGACCGTGCCAGTGTTGTTCTGGGTTTTGGGGAGCGTTTGGTTCTGGGACTCTGCGCAGGGAGGGACTATAGGCGT
GAATGAAGATGATATTGTGACCCCAGGTACAGGAGACGGCATGGTGCCCCCAGGTATAGAAGACAAAATAACAACCACAG
GTGCTACTGGAGGGCTTAATGAATCTACTGGCAAGGCACCTCTGGTACCAACGCAGAGAGAGCGTGGGACGAAGCCTCCC
TTAGAGGAACTGTCCACCTCAGCAACCTCAGACCATGATCACAGAGAACACGAGAGTACAACCACTGTCAAAGTGGTGAC
TAGCCACTCTGTGGACAAGAAAACAAGTCACCCCAATAGAGATAATGCAGGGGATGAAACGCAGACAACAGATAAGAAAG
ATGGCTTGCCAGTAGTCACCCTGGTTGGAATCATAGTTGGCGTCTTGTTAGCCATTGGCTTCGTCGGAGGGATCTTCATT
GTTGTTATGAAGAAGATTTCTGGAAGGTTCTCGCCCTAA

Library Parental gene expression (RPM)
SRP007412_brain 9 .86 RPM
SRP007412_cerebellum 10 .81 RPM
SRP007412_heart 5 .39 RPM
SRP007412_kidney 5 .10 RPM
SRP007412_liver 0 .38 RPM
SRP007412_testis 1 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007003 ortholog_one2one 3 retrogenes
retro_chof_1612, retro_chof_2419, retro_chof_583,
Callithrix jacchus ENSCJAG00000013772 ortholog_one2one 1 retrogene
retro_cjac_1300,
Pteropus vampyrus ENSPVAG00000011180 ortholog_one2one 1 retrogene
retro_pvam_1402,
Tarsius syrichta ENSTSYG00000005667 ortholog_one2one 1 retrogene
retro_tsyr_1571,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_774 80.45 76.74
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Download FASTA sequences of all ENSMUSG00000028583 retrocopies