RetrogeneDB ID: | retro_chof_2419 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_73828:4735..5093(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDPN | ||
Ensembl ID: | ENSCHOG00000007003 | ||
Aliases: | None | ||
Description: | podoplanin [Source:HGNC Symbol;Acc:29602] |
Percent Identity: | 55.83 % |
Parental protein coverage: | 84.56 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | EDGAAVSPGVE-DGVVTPGASEQPDKSAGLTTQGLTTTKSVTVIRVTDRTPLEST----EESQKTTASNV |
..G....PGVE..G.VTPGASE.P..SAGLT..G....K.VTVI........EST....EESQ.TTA.N. | |
Retrocopy | QHGLTIFPGVE>NGMVTPGASEEPSNSAGLTILGPKRAKRVTVILMKGWSSIESTFHAQEESQNTTAPNA |
Parental | GTGHSEKVGGEALPTVENDGLTTVTLVGIIVGVSLATAFIGGVIYMVVRK |
..GHS.K.G.EA...VEN.GL..VTL.GIIVGV.LA..FIG.VI..VV.K | |
Retrocopy | VSGHSGKLGREAPSRVENNGLAIVTLIGIIVGVLLAIGFIGAVIIVVVQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007003 | 3 retrocopies |
retro_chof_1612, retro_chof_2419 , retro_chof_583,
|
Callithrix jacchus | ENSCJAG00000013772 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028583 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000011180 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005667 | 1 retrocopy |