RetrogeneDB ID: | retro_tsyr_1571 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_4939:44700..45074(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDPN | ||
Ensembl ID: | ENSTSYG00000005667 | ||
Aliases: | None | ||
Description: | podoplanin [Source:HGNC Symbol;Acc:29602] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 55.56 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ISPPGMWKAPVLLWVLGSASVWVLAQAANTLGPEDDLVTPGGQESTLPQGAEDDLVTPGAHEEFYNSPGM |
.S...MWK.PV.L.V.GSA..WVLAQ...T.GPEDD.VTPGG.E.TLPQGAE.D.VTPGAHEE.Y.SPG. | |
Retrocopy | LSARKMWKTPVPLGVMGSALLWVLAQRTSTVGPEDDPVTPGGDENTLPQGAEKDVVTPGAHEESYKSPGL |
Parental | TTLVATSTKSVTDVPPEDRPTPEST-VHAQEGSQSTTASDVATSHSMEKVGGETQT |
TTLVATSTK..TDV..ED.PTPEST..HAQE..QSTTA..VATS.S.....G...T | |
Retrocopy | TTLVATSTKCLTDVSTEDWPTPEST<MHAQEENQSTTALNVATSQSVYGESGWRNT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007003 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000013772 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028583 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000011180 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005667 | 1 retrocopy |
retro_tsyr_1571 ,
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