Parental gene:

ENSOCUG00000004329

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:19:48677635..48682657(+)


>ENSOCUG00000004329
ATGGCGCTTGACGGACCGGAGCAGATGGAGCTGGAAGAGGGGAAGGCAGGCAGCGGACTCCGCCAGTACTACCTGTCCAA
GATCGAGGAGCTGCAGCTGATTGTGAATGATAAGAGCCAAAACCTTCGTCGGCTGCAGGCACAGCGGAATGAGCTAAATG
CCAAAGTTCGCCTACTGCGGGAGGAGCTACAGCTGCTGCAGGAGCAGGGCTCCTACGTGGGAGAAGTCGTCCGGGCCATG
GATAAGAAGAAAGTGTTGGTCAAGGTGCATCCCGAGGGCAAGTTTGTCGTAGACGTGGACAAGAACATCGACATCAATGA
TGTGACGCCCAACTGCCGGGTTGCACTCAGAAACGACAGCTACACTCTGCACAAGATCCTGCCCAACAAAGTGGACCCCC
TCGTGTCACTCATGATGGTGGAGAAGGTGCCAGACTCCACCTACGAAATGATCGGGGGACTGGACAAGCAGATCAAGGAG
ATCAAAGAAGTGATCGAGCTGCCTGTCAAGCACCCTGAGCTCTTTGAAGCCCTGGGCATCGCACAACCCAAGGGAGTGCT
GCTGTACGGACCCCCAGGCACCGGGAAGACTTTGTTGGCCCGCGCTGTGGCTCATCACACCGACTGTACCTTTATCCGCG
TCTCCGGCTCTGAATTGGTACAGAAATTCATCGGAGAAGGGGCAAGAATGGTGCGGGAGCTGTTTGTCATGGCACGGGAA
CACGCTCCATCCATCATCTTCATGGACGAAATCGACTCCATCGGCTCCTCGCGGCTGGAGGGAGGCTCTGGAGGCGACAG
CGAAGTGCAGCGCACAATGCTTGAGCTGCTCAACCAGCTGGACGGCTTCGAGGCCACCAAGAACATCAAGGTCATCATGG
CTACTAATAGGATTGACATCTTGGATTCCGCTCTGCTTCGCCCAGGACGCATCGACAGAAAAATTGAATTCCCACCCCCC
AATGAAGAGGCTCGGCTGGACATCTTAAAGATCCATTCTCGGAAAATGAACCTGACCCGGGGGATCAACCTGAGAAAAAT
TGCTGAGCTGATGCCAGGAGCGTCAGGGGCTGAAGTTAAGGGTGTGTGCACAGAGGCCGGCATGTATGCCCTGCGGGAAC
GGCGAGTCCATGTCACCCAGGAGGACTTCGAGATGGCAGTTGCCAAGGTCATGCAAAAGGACAGTGAGAAGAACATGTCC
ATTAAGAAACTATGGAAGTGA

Library Parental gene expression (RPM)
SRP017611_liver 5 .40 RPM
SRP017611_kidney 11 .76 RPM
SRP017611_brain 10 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000002393 ortholog_one2many 1 retrogene
retro_dnov_1508,
Homo sapiens ENSG00000087191 ortholog_one2many 1 retrogene
retro_hsap_1949,
Gorilla gorilla ENSGGOG00000006803 ortholog_one2many 1 retrogene
retro_ggor_1418,
Macaca mulatta ENSMMUG00000016769 ortholog_one2many 1 retrogene
retro_mmul_1354,
Monodelphis domestica ENSMODG00000009873 ortholog_one2many 2 retrogenes
retro_mdom_1411, retro_mdom_1583,
Nomascus leucogenys ENSNLEG00000004150 ortholog_one2many 1 retrogene
retro_nleu_1480,
Otolemur garnettii ENSOGAG00000008296 ortholog_one2many 1 retrogene
retro_ogar_911,
Procavia capensis ENSPCAG00000002653 ortholog_one2many 1 retrogene
retro_pcap_352,
Pongo abelii ENSPPYG00000008533 ortholog_many2many 1 retrogene
retro_pabe_1606,
Pan troglodytes ENSPTRG00000009525 ortholog_one2many 1 retrogene
retro_ptro_1303,
Ictidomys tridecemlineatus ENSSTOG00000008945 ortholog_one2many 1 retrogene
retro_itri_1046,
Tupaia belangeri ENSTBEG00000010546 ortholog_one2many 3 retrogenes
retro_tbel_1411, retro_tbel_2422, retro_tbel_3450,
Tursiops truncatus ENSTTRG00000006984 ortholog_one2many 1 retrogene
retro_ttru_1532,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_78 96.94 80.54
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Download FASTA sequences of all ENSOCUG00000004329 retrocopies