Parental gene:

PSMC5, ENSPTRG00000009525

Aliases:None
Description:Pan troglodytes proteasome (prosome, macropain) 26S subunit, ATPase, 5 (PSMC5), mRNA. [Source:RefSeq mRNA;Acc:NM_001246524]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:17:62580782..62585394(+)


>ENSPTRG00000009525
ATGGCGCTTGACGGACCAGAGCAGATGGAGCTGGAGGAGGGGAAGGCAGGCAGCGGACTCCGCCAATATTATCTGTCCAA
GATTGAAGAACTCCAGCTGATTGTGAATGATAAGAGCCAAAACCTCCGGAGGCTGCAGGCACAGAGGAACGAACTAAATG
CTAAAGTTCGCCTATTGCGGGAGGAGCTACAGCTGCTGCAGGAGCAGGGCTCCTATGTGGGGGAAGTAGTCCGGGCCATG
GATAAGAAGAAAGTGTTGGTCAAGGTACATCCTGAAGGTAAATTTGTTGTAGACGTGGACAAAAACATTGACATCAATGA
TGTGACACCCAATTGCCGGGTGGCTCTAAGGAATGACAGCTACACTCTGCACAAGATCCTGCCCAACAAGGTAGACCCAT
TAGTGTCACTGATGATGGTGGAGAAAGTACCAGATTCAACTTATGAGATGATTGGTGGACTGGACAAACAGATCAAGGAG
ATCAAAGAAGTGATCGAGCTGCCTGTTAAGCATCCTGAGCTCTTCGAAGCACTGGGCATTGCTCAGCCCAAGGGAGTGCT
GCTGTATGGACCTCCAGGCACTGGGAAGACACTGTTGGCCCGGGCTGTGGCTCATCATACGGACTGTACCTTTATTCGTG
TCTCTGGCTCTGAATTGGTACAGAAATTCATAGGGGAAGGGGCAAGAATGGTGAGGGAGCTGTTTGTCATGGCACGGGAA
CATGCTCCGTCTATCATCTTCATGGACGAAATCGACTCCATCGGCTCCTCGCGGCTGGAGGGGGGTTCTGGAGGGGACAG
TGAAGTGCAGCGCACGATGCTGGAGTTGCTCAACCAGCTCGACGGTTTTGAGGCCACCAAGAACATCAAGGTTATCATGG
CTACTAATAGGATTGATATCCTGGACTCGGCACTGCTTCGCCCAGGGCGCATTGACAGAAAAATTGAATTCCCACCCCCC
AATGAGGAGGCCCGGCTGGACATTTTGAAGATTCATTCTCGGAAGATGAACCTGACCCGGGGGATCAACCTGAGAAAAAT
TGCTGAGCTCATGCCAGGAGCATCAGGGGCTGAAGTGAAGGGCGTGTGCACAGAAGCTGGCATGTATGCCCTGCGAGAAC
GGCGAGTCCATGTCACTCAGGAGGACTTTGAGATGGCAGTAGCCAAGGTCATGCAGAAGGACAGTGAGAAAAACATGTCC
ATCAAGAAATTATGGAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 149 .47 RPM
SRP007412_cerebellum 184 .05 RPM
SRP007412_heart 96 .71 RPM
SRP007412_kidney 161 .07 RPM
SRP007412_liver 133 .16 RPM
SRP007412_testis 154 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000002393 ortholog_one2one 1 retrogene
retro_dnov_1508,
Homo sapiens ENSG00000087191 ortholog_one2one 1 retrogene
retro_hsap_1949,
Gorilla gorilla ENSGGOG00000006803 ortholog_one2one 1 retrogene
retro_ggor_1418,
Macaca mulatta ENSMMUG00000016769 ortholog_one2one 1 retrogene
retro_mmul_1354,
Monodelphis domestica ENSMODG00000009873 ortholog_one2one 2 retrogenes
retro_mdom_1411, retro_mdom_1583,
Nomascus leucogenys ENSNLEG00000004150 ortholog_one2one 1 retrogene
retro_nleu_1480,
Oryctolagus cuniculus ENSOCUG00000004329 ortholog_one2many 1 retrogene
retro_ocun_78,
Otolemur garnettii ENSOGAG00000008296 ortholog_one2one 1 retrogene
retro_ogar_911,
Procavia capensis ENSPCAG00000002653 ortholog_one2one 1 retrogene
retro_pcap_352,
Pongo abelii ENSPPYG00000008533 ortholog_one2one 1 retrogene
retro_pabe_1606,
Ictidomys tridecemlineatus ENSSTOG00000008945 ortholog_one2one 1 retrogene
retro_itri_1046,
Tupaia belangeri ENSTBEG00000010546 ortholog_one2one 3 retrogenes
retro_tbel_1411, retro_tbel_2422, retro_tbel_3450,
Tursiops truncatus ENSTTRG00000006984 ortholog_one2one 1 retrogene
retro_ttru_1532,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1303 75.61 50.49
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Download FASTA sequences of all ENSPTRG00000009525 retrocopies