Parental gene:

SMEK2, ENSOCUG00000006880

Aliases:None
Description:SMEK homolog 2, suppressor of mek1 (Dictyostelium) [Source:HGNC Symbol;Acc:29267]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:2:130497647..130564769(+)


>ENSOCUG00000006880
ATGTCGGATACGCGGCGGCGAGTGAAGGTGTATACTCTGAACGAAGACCGGCAGTGGGACGACAGAGGCACTGGGCACGT
CTCCTCCACGTACGTGGAGGAGCTCAAAGGGATGTCGCTGCTGGTTCGGGCAGAGTCCGACGGATCACTACTCTTGGAAT
CAAAGATAAATCCAAACACTGCATATCAGAAACAACAGGATACATTAATTGTTTGGTCAGAAGCTGAGAACTATGATCTG
GCTCTAAGTTTTCAGGAAAAAGCTGGCTGTGATGAGATCTGGGAAAAAATTTGTCAGGTTCAAGGTAAGGACCCATCAGT
GGAAGTCACACAAGACCTCATTGATGAATCAGAAGAAGAACGATTTGAAGAAATGCCTGAAACTAGTCATCTTATTGACC
TACCCACTTGTGAACTCAATAAACTTGAAGAGATTGCTGACTTAGTTACCTCAGTTCTCTCCTCACCTATTCGTAGGGAA
AAGCTGGCTTTGGCCTTGGAAAATGAAGGCTATATTAAAAAACTACTGCAGCTGTTCCAAGCATGTGAGAACCTAGAAAA
CACTGAAGGTTTACACCATCTGTATGAAATTATTAGAGGAATCTTATTCCTAAATAAAGCAACTCTTTTTGAGGTAATGT
TTTCTGATGAGTGTATCATGGATGTCGTGGGATGCCTTGAATATGACCCTGCTTTGGCTCAGCCAAAAAGACATAGAGAA
TTCTTGACCAAGACTGCAAAATTTAAGGAAGTTATACCAATAACAGACTCTGAACTAAGGCAAAAAATACATCAGACTTA
CAGGGTACAGTACATTCAGGACATCATTTTGCCTACGCCATCTGTTTTTGAAGAGAATTTTCTTTCTACTCTTACGTCTT
TTATTTTCTTCAACAAAGTTGAGATAGTCAGCATGTTGCAGGAAGATGAAAAGTTCTTGTCTGAAGTTTTTGCACAATTA
ACAGATGAGGCTACTGATGATGATAAACGACGTGAGTTGGTTAATTTTTTCAAGGAATTTTGTGCATTTTCTCAGACATT
ACAACCTCAAAACAGGGATGCATTTTTCAAAACTTTGGCAAAATTGGGAATCCTTCCTGCTCTTGAAATTGTAATGGGCA
TGGATGATTTGCAAGTCAGATCAGCTGCTACAGATATATTTTCTTATCTAGTAGAGTTTAGTCCATCTATGGTCCGAGAG
TTTGTAATGCAAGAAGCCCAACAAAGTGACGATGATATTCTTCTTATTAATGTAGTAATTGAACAAATGATCTGTGATAC
TGATCCTGAACTTGGAGGTGCTGTTCAGTTAATGGGACTTCTTCGTACTCTAATTGATCCAGAGAACATGCTAGCTACAA
CTAACAAAACTGAAAAAAGCGAATTTCTAAATTTCTTCTACAACCATTGTATGCATGTCCTCACAGCACCACTTTTGACC
AATACTTCAGAAGACAAATGTGAAAAGGGTAGGGTCTCTTATCTATCTACTTATGATTCCTGTTTTTATAATAATTATCA
AACAGCACAGCTACTTGCCTTAATTTTAGAGTTACTCACATTTTGTGTGGAACATCACACATACCACATTAAAAACTATA
TTATGAATAAGGATTTGCTAAGAAGAGTCTTGGTCTTGATGAATTCAAAGCACACTTTCCTGGCCTTGTGTGCTCTTCGC
TTTATGAGGCGGATAATTGGCCTTAAAGATGAATTTTATAATCGTTACATCACCAAAGGAAATCTTTTTGAGCCAGTTAT
AAATGCTCTACTGGATAATGGAACTCGGTACAATCTGTTAAATTCAGCTGTTATTGAGTTGTTTGAATTTATAAGAGTGG
AAGATATCAAGTCTCTTACTGCACATATAGTTGAAAACTTTTATAAAGCACTTGAATCGATTGAATATGTTCAGACATTC
AAAGGATTGAAGACTAAATATGAGCAAGAAAAAGACAGACAAAGTCAGAAACTGAACAGTGTACCATCTATATTGCGTAG
TAACAGATTTCGCAGAGATGCAAAAGCTTTGGAAGAGGATGAAGAAATGTGGTTTAATGAAGATGAAGAGGAGGAAGGAA
AAGCAGTTGTAGCACCAGTTGAAAAATCTAAACCAGAAGATGATTTTCCCGATAGCTATGAAAAGTTTATGGAGACGAAA
AAAGCAAAAGAAAGTGAAGACAAGGAAAACCTTCCCAAAAGGACATCTTCTGGTGGCTTCAAATTTACTTTCTCGCACTC
TACCAGTGCTGCTAATGGAACAAACAGTACGAACAGTAAATCTGTAGTAGCTCAGACATCACCAGCAAGTTCTAATGGGT
CCTCTTCCAAACCTACAAACTTGACTTCATCAGTAACAGCTACCAAGGGAAGTTTGGTTGGCTTAGTGGATTATCCAGAT
GATGAAGAGGAAGATGAAGAAGAAGAAACATCCCCCAGGAAAAGACCTCGTCTTGGCTCA

Library Parental gene expression (RPM)
SRP017611_liver 20 .73 RPM
SRP017611_kidney 44 .80 RPM
SRP017611_brain 46 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003843 ortholog_one2one 1 retrogene
retro_amel_48,
Bos taurus ENSBTAG00000000545 ortholog_one2one 1 retrogene
retro_btau_232,
Canis familiaris ENSCAFG00000002860 ortholog_one2one 1 retrogene
retro_cfam_226,
Equus caballus ENSECAG00000013819 ortholog_one2one 1 retrogene
retro_ecab_23,
Echinops telfairi ENSETEG00000002420 ortholog_one2many 1 retrogene
retro_etel_1699,
Felis catus ENSFCAG00000026457 ortholog_one2one 1 retrogene
retro_fcat_13,
Homo sapiens ENSG00000138041 ortholog_one2one 1 retrogene
retro_hsap_4799,
Loxodonta africana ENSLAFG00000017825 ortholog_one2many 1 retrogene
retro_lafr_791,
Myotis lucifugus ENSMLUG00000003875 ortholog_one2many 1 retrogene
retro_mluc_994,
Macaca mulatta ENSMMUG00000007001 ortholog_one2one 1 retrogene
retro_mmul_238,
Mustela putorius furo ENSMPUG00000002435 ortholog_one2one 1 retrogene
retro_mputfur_92,
Nomascus leucogenys ENSNLEG00000009338 ortholog_one2one 1 retrogene
retro_nleu_1112,
Otolemur garnettii ENSOGAG00000009837 ortholog_one2one 1 retrogene
retro_ogar_140,
Pan troglodytes ENSPTRG00000011933 ortholog_one2one 1 retrogene
retro_ptro_3191,
Sus scrofa ENSSSCG00000008398 ortholog_one2one 1 retrogene
retro_sscr_1187,
Ictidomys tridecemlineatus ENSSTOG00000006276 ortholog_one2one 1 retrogene
retro_itri_63,
Tursiops truncatus ENSTTRG00000000027 ortholog_one2one 1 retrogene
retro_ttru_1397,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_9 67.09 86.34
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSOCUG00000006880 retrocopies