RetrogeneDB ID:

retro_mputfur_92

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896981.1:8061209..8063807(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMPUG00000018953
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:SMEK2
Ensembl ID:ENSMPUG00000002435
Aliases:None
Description:SMEK homolog 2, suppressor of mek1 (Dictyostelium) [Source:HGNC Symbol;Acc:29267]


Retrocopy-Parental alignment summary:






>retro_mputfur_92
ATGGAGAGAGGGAAACCTAAGATGGAAGTGAGAGGAAGTGGGACTCGAGGGAACTCTGCGGACCTCAGGAACCACCAGCG
TCCACCTGAACGCTACTTCTCTGCCATCTTCCACCGTAATTTTCCCCTCCCGCCACCTGAGCAATGGTCGCTGCCACAAC
AGCGACAACTACAGTCAACTCCAGGCACATGCGACCCAGCGGCCCCCCACACCGAGACCAACACTGGGGACGGGAAGCCA
GCGGTCGCCATTGCCGACACACGGTATCTTGTAAAAGTCTACTCACTGAATGAGGACCAACAATGGGATGATCTCGGCAC
CGGGCACGTCTCCTCTACTTATGTGAAGCGCCTCCAGGGTGTGTCCCTGCTCGTTAGGTCGGATTCCCAGGCCGCACTAA
TCTTGGAATCAAAGATAAATTCAAATACCCCCTATCAGAAACAACAGGAAACCCTGATTATTTGGTCTGAAGGAGAGAAC
CATGGTGTGGCATTAAGTTTCCAGGACACTGAGGGTTGCCATAAGATCTGGGAAGAAATTTGCCACATTCAGGGAAAAGA
CCCATCCATCAAAATCACACAAGATCTCTTGGAGGAATCCAAAGAAGAACAACTGCATGACGTCCTGGAAACCAATAATG
TGTTTGACCTGCCTAACTGTGAACTCTGTAAACTTGAAGAGATTGCTGACTTCATTACCGCCGTTCTCGCTTCACCGATC
CGTAAGGAGAGACTGGCTCTGATCTTAGAAAATGACGACTATATTAAAAATTTGCTGCAGCTGTTCCACACTTGTGAGGA
CCTAGGGAACACTGCAGGCTTACATCATTTGCATACAATTATTAAAGGCATCTTATTCCTTAACAAGACAGCTCTGTTTG
AGATCATGTTTTCTGCTGAGTGTATCATGGATGTGGTGGGATGTCTTGAATATGACCCTGCTTTGGCTCAGCCAAAAAGG
CATAGGGAATTCTTGACCCAACATGCAAGGCTCAAGGAAGTTGTACCAATAACAAACGGTGAACTTAGGCAAAAAATACA
TCAGACATATAAGATACAGTACATCTATGACATACTTTTGCCAGCACCATCCATGTATGAAGAGAACTTTCTTTCGAGTC
TTACAACTTTTATTTTCCTCAACAAGGTTGAGATAGTCAGCATGTTGCAGGACGAAAACTTTTTGTCTGAAGTCTTTGCA
CAGTTAAAGAATGCGGCAATAGATGATGATAGACGGCGTGAATTGCTACTTTTCTTCAAGGAATTCTGTGCATTTTCTCA
GACATTACAGCCTCCAAAGAAGGATGCTCTGTTCAAAACACTGACAGAATTGGGAATTCTTCCTGTTCTTAAAATCGTAA
TGAGCATGGAGAATTTGCAAATAAGGTCAGCTGCTACTGATATATTTACTTATCTCGTAGAGTATAGTCCATCCATGATT
CGAGAATTTATCATGGAAGAAGCTCAGGAGAGTGAAGATGGTAACCTTTTCATTAACTTAGTCATTGAGCAAATGATCTG
CGATACTGATCCTGAGCTAGGAGGTGCTGTTCATTTAATGGGACTTCTTCGTACTCTTCTTGATCCAGAAAACATGCATG
CAACATCTACTAAATGTGAAAGAAGTGAATTCCTAAATTTTTTCTACAAGCATTGTATACACAACTTCATAGCACCACTT
GTTGCCACCACTTCAGAAGATATATGTGAAGGGGATAGTGAAGTTGGGTCTGACGAAAACAACACACATTGCCTCAATAA
TTATCAAACAGCACAGCTGCTTTCTTTAATTTTAGAGCTGCTCACATTTTGTGTGCAACATCACACATACTACATAAAAA
ATTATATTTTGAGCAAAGACTTGCTAAGAAGAGTCTTGATCTTGATAAATTCAAAGCACACTTTCCTGGTCTTGAGTTCG
CTCCGCTTTATGAGAAGGATGATTGGCCTTAAAGATGAACTTTATAATTGTTACATCATCAAGGGAAATCTTTTTGAACC
AGTTGTCAAAGCTCTTCTGGGTAATGGAACTCGGTACAATATGTTGAATTCAGCTGCTATTGAGCTGTTTGAATACATAA
GAGCGGAAAATATCAAATCTCTTATTACACATATAGTTGAAAAGTTTTATAAGGCACTTGAATCGATTGAATATGTCCAG
ACATTCAAAGGATTGAAGATTAAATATGAACAAGAAAAAGACCGGCAGAATCAAATACGGAAGAATTTACATTCTATCTT
GCATAGTAAAATACTTCGCAGGAGTACCAGAGTCATGGACAAGAAGGAAGAAAAGTGTCTTAAAGGAAATTCAGAGGAAG
GAGAAGCAACTATGCCACCACTGGAAGACAATTTTCAAGATCGTTTCAAATTTATGGAGACTAAAAAACCAAAGGAAAAT
GAAGACAAGGTAGCTCCTCCTAAAAGATCATCTTCAGGGGGCTACAAATACACCATATCCCATTCTGCTGCTGCTGCTAA
TGGAACACGTAGCCTGCAGGGAAGCAGCACTGTTGGCTTAATGAATCCTCCCGATGATGATGAAAAAGATAAGGAAGATG
AAACATCTCCCAGGAAGAGACCACATCTTAGCCTGTAA

ORF - retro_mputfur_92 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.9 %
Parental protein coverage: 85.8 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalMSDTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLI
..DTR..VKVY.LNED.QWDD.GTGHVSSTYV..L.G.SLLVR..S...L.LESKIN.NT.YQKQQ.TLI
RetrocopyIADTRYLVKVYSLNEDQQWDDLGTGHVSSTYVKRLQGVSLLVRSDSQAALILESKINSNTPYQKQQETLI
ParentalVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFEEMPETSHLIDLPTCELS
.WSE.EN...ALSFQ...GC..IWE.IC..QGKDPS...TQDL..ES.EE......ET....DLP.CEL.
RetrocopyIWSEGENHGVALSFQDTEGCHKIWEEICHIQGKDPSIKITQDLLEESKEEQLHDVLETNNVFDLPNCELC
ParentalKLEEIADLVTSVLSSPIRREKLALALENEGYIKKLLQLFQACENLENTEGLHHLYEIIRGILFLNKATLF
KLEEIAD..T.VL.SPIR.E.LAL.LEN..YIK.LLQLF..CE.L.NT.GLHHL..II.GILFLNK..LF
RetrocopyKLEEIADFITAVLASPIRKERLALILENDDYIKNLLQLFHTCEDLGNTAGLHHLHTIIKGILFLNKTALF
ParentalEVMFSDECIMDVVGCLEYDPALAQPKRHREFLTKTAKFKEVIPITDSELRQKIHQTYRVQYIQDIILPTP
E.MFS.ECIMDVVGCLEYDPALAQPKRHREFLT..A..KEV.PIT..ELRQKIHQTY..QYI.DI.LP.P
RetrocopyEIMFSAECIMDVVGCLEYDPALAQPKRHREFLTQHARLKEVVPITNGELRQKIHQTYKIQYIYDILLPAP
ParentalSVFEENFLSTLTSFIFFNKVEIVSMLQEDEKFLSEVFAQLTDEATDDDKRRELVNFFKEFCAFSQTLQPQ
S..EENFLS.LT.FIF.NKVEIVSMLQ.DE.FLSEVFAQL...A.DDD.RREL..FFKEFCAFSQTLQP.
RetrocopySMYEENFLSSLTTFIFLNKVEIVSMLQ-DENFLSEVFAQLKNAAIDDDRRRELLLFFKEFCAFSQTLQPP
ParentalNRDAFFKTLAKLGILPALEIVMGMDDLQVRSAATDIFSYLVEFSPSMVREFVMQEAQQSDDDILLINVVI
..DA.FKTL..LGILP.L.IVM.M..LQ.RSAATDIF.YLVE.SPSM.REF.M.EAQ.S.D..L.IN.VI
RetrocopyKKDALFKTLTELGILPVLKIVMSMENLQIRSAATDIFTYLVEYSPSMIREFIMEEAQESEDGNLFINLVI
ParentalEQMICDTDPELGGAVQLMGLLRTLIDPENMLATTNKTEKSEFLNFFYNHCMHVLTAPLLTNTSEDKCEKD
EQMICDTDPELGGAV.LMGLLRTL.DPENM.AT..K.E.SEFLNFFY.HC.H...APL...TSED.CE.D
RetrocopyEQMICDTDPELGGAVHLMGLLRTLLDPENMHATSTKCERSEFLNFFYKHCIHNFIAPLVATTSEDICEGD
ParentalNIVGSNKNSTICPDNYQTAQLLALILELLTFCVEHHTYHIKNYIMNKDLLRRVLVLMNSKHTFLALCALR
..VGS..N.T.C..NYQTAQLL.LILELLTFCV.HHTY.IKNYI..KDLLRRVL.L.NSKHTFL.L..LR
RetrocopySEVGSDENNTHCLNNYQTAQLLSLILELLTFCVQHHTYYIKNYILSKDLLRRVLILINSKHTFLVLSSLR
ParentalFMRRIIGLKDEFYNRYITKGNLFEPVINALLDNGTRYNLLNSAVIELFEFIRVEDIKSLTAHIVENFYKA
FMRR.IGLKDE.YN.YI.KGNLFEPV..ALL.NGTRYN.LNSA.IELFE.IR.E.IKSL..HIVE.FYKA
RetrocopyFMRRMIGLKDELYNCYIIKGNLFEPVVKALLGNGTRYNMLNSAAIELFEYIRAENIKSLITHIVEKFYKA
ParentalLESIEYVQTFKGLKTKYEQEKDRQNQKLNSVPSILRSNRFRRDAKALEEDEEMWFNEDEEEEGKAVVAPV
LESIEYVQTFKGLK.KYEQEKDRQNQ......SIL.S...RR........EE........EEG.A...P.
RetrocopyLESIEYVQTFKGLKIKYEQEKDRQNQIRKNLHSILHSKILRRSTRVMDKKEEKCL-KGNSEEGEATMPPL
ParentalE
E
RetrocopyE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Mustela putorius furo was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mputfur_92 retrocopy.

TSS - click to see more details

Mustela putorius furo was not studied using FANTOM5 data.

Lab - click to see more details

retro_mputfur_92 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 18 parental genes, and 18 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000038431 retrocopy
retro_amel_48,
Bos taurus ENSBTAG000000005451 retrocopy
retro_btau_232,
Canis familiaris ENSCAFG000000028601 retrocopy
retro_cfam_226,
Equus caballus ENSECAG000000138191 retrocopy
retro_ecab_23,
Echinops telfairi ENSETEG000000024201 retrocopy
retro_etel_1699,
Felis catus ENSFCAG000000264571 retrocopy
retro_fcat_13,
Homo sapiens ENSG000001380411 retrocopy
retro_hsap_4799,
Loxodonta africana ENSLAFG000000178251 retrocopy
retro_lafr_791,
Myotis lucifugus ENSMLUG000000038751 retrocopy
retro_mluc_994,
Macaca mulatta ENSMMUG000000070011 retrocopy
retro_mmul_238,
Mustela putorius furoENSMPUG00000002435 1 retrocopy
retro_mputfur_92 ,
Nomascus leucogenys ENSNLEG000000093381 retrocopy
retro_nleu_1112,
Oryctolagus cuniculus ENSOCUG000000068801 retrocopy
retro_ocun_9,
Otolemur garnettii ENSOGAG000000098371 retrocopy
retro_ogar_140,
Pan troglodytes ENSPTRG000000119331 retrocopy
retro_ptro_3191,
Sus scrofa ENSSSCG000000083981 retrocopy
retro_sscr_1187,
Ictidomys tridecemlineatus ENSSTOG000000062761 retrocopy
retro_itri_63,
Tursiops truncatus ENSTTRG000000000271 retrocopy
retro_ttru_1397,


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