Parental gene:

ATP6V1E1, ENSOCUG00000006964

Aliases:None
Description:ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018809:13280..45990(-)


>ENSOCUG00000006964
ATGGCCCTCAGCGATGCTGATGTGCAAAAGCAGATTAAGCACATGATGGCTTTCATTGAACAAGAAGCCAACGAGAAAGC
AGAAGAAATAGATGCAAAGGCGGAAGAGGAATTCAACATCGAGAAAGGTCGTCTTGTGCAAACCCAGAGATTGAAGATTA
TGGAATACTATGAGAAGAAAGAAAAGCAGATTGAGCAGCAGAAGAAAATTCAGATGTCCAATTTGATGAATCAAGCAAGG
CTGAAAGTCCTCAGAGCAAGAGATGATCTTATCACAGACCTTCTAAATGAAGCAAAACAGAGACTCAGCAAGGTGGTGAA
AGACACAACCAGGTACCAAGTGCTGCTCGATGGATTGGTCCTCCAGGGTTTATACCAGTTGTTGGAGCCCAGAATGATTG
TTCGTTGCAGGAAACAAGATTTCCCTCTGGTAAAGGCTGCTGTGCAAAAAGCAATCCCTATGTACAAAATTGCCACCAAA
AAAGATGTTGATGTCCAGATTGATCAGGAGGCCTACCTGCCTGAGGACATAGCTGGTGGAGTTGAGATTTATAATGGAGA
CCGTAAAATAAAAGTTTCCAACACCCTAGAAAGCCGGTTGGACCTCATAGCCCAGCAGATGATGCCAGAAGTAAGGGGAG
CTTTGTTTGGTGCGAATGCCAATAGGAAGTTTTTGGACTAA

Library Parental gene expression (RPM)
SRP017611_liver 23 .05 RPM
SRP017611_kidney 131 .97 RPM
SRP017611_brain 190 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017489 possible_ortholog 2 retrogenes
retro_amel_116, retro_amel_1502,
Canis familiaris ENSCAFG00000016151 possible_ortholog 7 retrogenes
retro_cfam_1050, retro_cfam_1260, retro_cfam_1354, retro_cfam_1379, retro_cfam_1446, retro_cfam_1997, retro_cfam_73,
Callithrix jacchus ENSCJAG00000017277 ortholog_one2one 1 retrogene
retro_cjac_1160,
Dasypus novemcinctus ENSDNOG00000014592 ortholog_one2one 3 retrogenes
retro_dnov_2037, retro_dnov_44, retro_dnov_688,
Echinops telfairi ENSETEG00000019283 ortholog_one2one 2 retrogenes
retro_etel_1384, retro_etel_6,
Loxodonta africana ENSLAFG00000003802 ortholog_one2one 4 retrogenes
retro_lafr_1220, retro_lafr_123, retro_lafr_134, retro_lafr_742,
Myotis lucifugus ENSMLUG00000014876 possible_ortholog 2 retrogenes
retro_mluc_312, retro_mluc_57,
Monodelphis domestica ENSMODG00000018452 ortholog_many2many 4 retrogenes
retro_mdom_1456, retro_mdom_1853, retro_mdom_248, retro_mdom_489,
Mustela putorius furo ENSMPUG00000018109 possible_ortholog 2 retrogenes
retro_mputfur_23, retro_mputfur_4,
Ochotona princeps ENSOPRG00000004591 ortholog_one2one 2 retrogenes
retro_opri_184, retro_opri_539,
Procavia capensis ENSPCAG00000016094 ortholog_one2one 1 retrogene
retro_pcap_455,
Rattus norvegicus ENSRNOG00000011905 possible_ortholog 1 retrogene
retro_rnor_383,
Sarcophilus harrisii ENSSHAG00000008300 ortholog_one2many 2 retrogenes
retro_shar_501, retro_shar_780,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_88 74.11 99.12
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Download FASTA sequences of all ENSOCUG00000006964 retrocopies