RetrogeneDB ID: | retro_cfam_1379 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 3:46489700..46490379(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000016151 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.87 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MALSDADVQKQIKHMMAFIEQEANEK-AEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKK |
MALSDA.VQK.IKH.MAFIEQEANEK.AEEIDAKAEEEFNIEKGRLVQTQ.LKIMEYYEKKEKQIEQQKK | |
Retrocopy | MALSDANVQK*IKHTMAFIEQEANEK>AEEIDAKAEEEFNIEKGRLVQTQSLKIMEYYEKKEKQIEQQKK |
Parental | IQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQ |
IQMSNLMNQARL.VLRA..DLI.DLLNEAKQ.LSKVVKDTT.YQVLLDGLV.QGL.QLLEP.M.V.CRK. | |
Retrocopy | IQMSNLMNQARL*VLRAKGDLIADLLNEAKQKLSKVVKDTTNYQVLLDGLVFQGLHQLLEPQMTVCCRK* |
Parental | DFPLVKAAVQKAIPMYKIATKKDVDVQIDQESYLPEEIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMP |
D.PLVKA.VQKAIPMYKIATKKDVDVQIDQESYLPEE.AGGVEIYNGDRKIKVSNTLESRLDLIAQQMMP | |
Retrocopy | DLPLVKAEVQKAIPMYKIATKKDVDVQIDQESYLPEERAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMP |
Parental | EVRGALFGANANRKFLD |
EV.GALFG.NA.RKFLD | |
Retrocopy | EVQGALFGGNASRKFLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 164 .76 RPM |
SRP017611_brain | 0 .08 RPM | 146 .32 RPM |
SRP017611_kidney | 0 .00 RPM | 168 .79 RPM |
SRP017611_liver | 0 .00 RPM | 24 .94 RPM |