Parental gene:

CCNE1, ENSOCUG00000009143

Aliases:None
Description:cyclin E1 [Source:HGNC Symbol;Acc:1589]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018722:608864..621359(+)


>ENSOCUG00000009143
ATGCCGAGGGAGAGGAAAGAGAGGGATGCGAAGGAACGGGGCACCATGAAAGACGACGGCGGCAGCGACTTCTCTGTCCG
GTCCAGGAAAAGGAAGGCAAATGTGGCCGTTTTTTTGCAGGATCCAGATGAGCAAATTGCCAAGATTGACAGGACTGTGA
GAGGCCAGTGCGGCAGTCAGCCTTGGGACAGCGATGCAGTACGTGCAGACCCCTGCTCCTCGATCCCCACACCCGACAAG
GAAGAGGATGAGCCGGTCTACGCCAACTCCACGTTTGATCCTCATAGCTTGGCACCAGCCAGAGCTTCGCCGCTGCCTGT
TCTGAACTGGGCAAATAGAGAGGAGGTCTGGAAAATCATGTTAAACAAGGAAAAGAAGTACTTAAGGGATCAGCACTTTC
TGCAGCGACACCCTCTTCTGCAGCCTAAAATGCGAGCGATTCTTCTGGACTGGCTAATGGAGGTGTGTGAAGTCTATAAG
CTTCACAGGGAGACATTTTACTTGGCACAGGATTTCTTTGATCGGTACATGGCCACACAAGAAAATATTGTAAAAACACT
TCTACAACTTATTGGGATCTCATCTTTATTTATTGCTGCCAAACTCGAGGAAATCTACCCTCCGAAGCTGCACCAGTTTG
CTTATGTCACCGACGGGGCTTGTTCAGGGGACGAGATTCTTACCATGGAATTAGTGATTATGAAGGCCCTTAAGTGGCAT
TTAAGTCCCCTGACCATTGTGTCCTGGCTGAACGTCTACATGCAGGTTGCGTACCTGAATGATGTGTGTGAGGTGCTACT
GCCACAGTATCCCCAGCAAATCTTCACACAGATTGCAGAGCTTTTAGATCTCTGTGTCCTGGATGTCGGCTGCCTAGAAT
TTTCCTATGGTGTCCTCGCTGCCTCCGCCTTGTACCATTTCTCGTCATCCGAGTTGATGCAGAAGGTGTCAGGGTATCAG
TGGTGTGACATCGAGAAGTGTGTCAAGTGGATGGTTCCATTTGCCATGGTTATAAGAGAGACAGGAAGCTCCAAACTGAA
GCACTTCAGGGGGGTTCCCGCCGAAGACGCGCACAACATACAGACCCACATCAACAGCTTGGATTTGCTGGACAAAGCCC
AAGCAAAGAAAGCCATATTGTCGGAACAGAATAGGATGTCGCCTCTCCCCACTGGGGTCCTCACCCCCCCACCGAGCAGT
AAGAAGCAGAACAGTGAGCAGGGAACAGTGTGA

Library Parental gene expression (RPM)
SRP017611_liver 0 .46 RPM
SRP017611_kidney 1 .93 RPM
SRP017611_brain 10 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000001857 ortholog_one2one 2 retrogenes
retro_cjac_3786, retro_cjac_3996,
Oryctolagus cuniculus ENSOCUG00000015589 within_species_paralog 1 retrogene
retro_ocun_1277,
Oryctolagus cuniculus ENSOCUG00000028042 other_paralog 1 retrogene
retro_ocun_169,
Otolemur garnettii ENSOGAG00000006217 ortholog_one2one 2 retrogenes
retro_ogar_3309, retro_ogar_930,
Sus scrofa ENSSSCG00000002855 ortholog_one2one 1 retrogene
retro_sscr_232,
Vicugna pacos ENSVPAG00000001390 ortholog_one2one 1 retrogene
retro_vpac_219,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_676 62.54 83.90
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Download FASTA sequences of all ENSOCUG00000009143 retrocopies