RetrogeneDB ID: | retro_ocun_970 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 18:28150731..28151118(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF3 | ||
Ensembl ID: | ENSOCUG00000006684 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 3 [Source:HGNC Symbol;Acc:10785] |
Percent Identity: | 74.44 % |
Parental protein coverage: | 79.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | GPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGC-RVRVELSNGEKRSRNRGPPPSWGRRPRD |
GPL.SVWVA.NPPGF.F.EFEDPRDAADA..ELDGR.LCG..RV.VEL.NGEKR.RN.GP.PSWGR.... | |
Retrocopy | GPLPSVWVAMNPPGFVFDEFEDPRDAADAILELDGRRLCGW>RVKVELQNGEKRRRNCGPSPSWGRHRGG |
Parental | DYRR-RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK |
D..R...PP.R.RSP.RRSFS.S.SRSLSRD.RRERSL..ERNHKPS.SFSRSRS.S.SNERK | |
Retrocopy | DCPR<SPPP-RCRSP-RRSFSCSLSRSLSRDKRRERSLFEERNHKPSGSFSRSRSQSKSNERK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 156 .79 RPM |
SRP017611_kidney | 0 .10 RPM | 149 .40 RPM |
SRP017611_liver | 0 .00 RPM | 44 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016062 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000000421 | 9 retrocopies | |
Equus caballus | ENSECAG00000018741 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000017186 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000018193 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000010671 | 6 retrocopies | |
Mus musculus | ENSMUSG00000071172 | 9 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006684 | 3 retrocopies |
retro_ocun_415, retro_ocun_772, retro_ocun_970 ,
|
Oryctolagus cuniculus | ENSOCUG00000009785 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000502 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000018106 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000001564 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014280 | 5 retrocopies |