Parental gene: | ENSOCUG00000021848 |
| Aliases: | None |
| Description: | None |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | X:49749410..49757956(+) |
>ENSOCUG00000021848
TGCAGAAGCAATAAAAACCTTTTAAACTTGGAGAAAGCAAAACCCATACTTCAAAGGAAAGCATCATTCAGCCATCATCC
ACCCAGCAGCACAACCAGGCAGCAGCAAGCAGCAGCCCACCCACCACCAACCAATTCCCTGCTAATGGGGCAACAGGCCC
AGCAACCCAGAGAAGGCTTGACCATTGACCTGAAGAATTTTAGGAAACCAGGAGAGAAGACCTTCACCCAGCGTAGCCGT
CTCTTTGTGGGAAATCTTCCTCCTGACATCACCGAGGAGGAAATGAGGAAACTATTTGAGAAATATGGGAAGGCAGGCGA
AGTCTTCATTCATAAGGATAAAGGCTTTGGCTTTATCCGCTTGGAAACAAGAACCTTAGCGGAGATTGCCAAAGTGGAGC
TGGACAATATGCCATTACGTGGAAAGCAGCTGCGTGTGCGCTTTGCATGCCATAGTGCATCCCTTACAGTCCGAAACCTT
CCTCAGTATGTGTCTAATGAGCTGCTGGAAGAAGCCTTTTCTGTTTTTGGCCAGGTGGAGAGGGCCGTGGTCATTGTGGA
TGATCGAGGAAGGCCCTCAGGAAAAGGCATTGTTGAGTTCTCAGGGAAGCCAGCTGCTCGGAAAGCTCTGGACAGATGCA
GTGAAGGCTCCTTCCTGCTAACTACATTTCCTCGGCCTGTGACTGTGGAACCCATGGACCAGTTAGATGATGAAGAGGGA
CTTCCAGAGAAGCTGGTTATTAAGAACCAGCAATTTCACAAAGAGAGAGAGCAGCCACCCAGATTTGCACAGCCTGGCTC
TTTTGAGTATGAATATGCCATGCGCTGGAAGGCACTCATTGAGATGGAGAAGCAGCAGCAAGACCAAGTAGACCGTAACA
TCAAGGAGGCTCGCGAGAAGTTGGAGATGGAGATGGAGGCTGCTCGCCATGAGCACCAGGTCATGCTGATGAGGCAGGAT
TTGATGAGGCGCCAAGAAGAACTTCGGAGAATGGAAGAGTTGCACAACCAAGAAGTGCAAAAACGGAAGCAACTGGAGCT
CAGGCAGGAAGAGGAGCGCAGACGCCGTGAGGAAGAGATGCGACGGCAGCAGGAAGAAATGATGCGGCGACAGCAGGAAG
GATTCAAGGGAACCTTCCCTGATGCGAGAGAACAGGAGATACGGATGGGCCAGATGGCTATGGGAGGTGCTATGGGCATA
AACAACAGAGGTGCCATGCCCCCCGCTCCTGTGCCAGCTGGTACCCCAGCACCTCCAGGACCTGCCACTATGATGCCGGA
TGGAACCTTGGGATTGACCCCACCAACGACTGAACGTTTTGGCCAAGCTGCTACAATGGAAGGAATTGGGGCAATTGGTG
GAACTCCTCCTGCATTCAACCGTGCAGCTCCTGGAGCTGAATTTGCTCCAAACAAACGTCGCCGATACTAA
TGCAGAAGCAATAAAAACCTTTTAAACTTGGAGAAAGCAAAACCCATACTTCAAAGGAAAGCATCATTCAGCCATCATCC
ACCCAGCAGCACAACCAGGCAGCAGCAAGCAGCAGCCCACCCACCACCAACCAATTCCCTGCTAATGGGGCAACAGGCCC
AGCAACCCAGAGAAGGCTTGACCATTGACCTGAAGAATTTTAGGAAACCAGGAGAGAAGACCTTCACCCAGCGTAGCCGT
CTCTTTGTGGGAAATCTTCCTCCTGACATCACCGAGGAGGAAATGAGGAAACTATTTGAGAAATATGGGAAGGCAGGCGA
AGTCTTCATTCATAAGGATAAAGGCTTTGGCTTTATCCGCTTGGAAACAAGAACCTTAGCGGAGATTGCCAAAGTGGAGC
TGGACAATATGCCATTACGTGGAAAGCAGCTGCGTGTGCGCTTTGCATGCCATAGTGCATCCCTTACAGTCCGAAACCTT
CCTCAGTATGTGTCTAATGAGCTGCTGGAAGAAGCCTTTTCTGTTTTTGGCCAGGTGGAGAGGGCCGTGGTCATTGTGGA
TGATCGAGGAAGGCCCTCAGGAAAAGGCATTGTTGAGTTCTCAGGGAAGCCAGCTGCTCGGAAAGCTCTGGACAGATGCA
GTGAAGGCTCCTTCCTGCTAACTACATTTCCTCGGCCTGTGACTGTGGAACCCATGGACCAGTTAGATGATGAAGAGGGA
CTTCCAGAGAAGCTGGTTATTAAGAACCAGCAATTTCACAAAGAGAGAGAGCAGCCACCCAGATTTGCACAGCCTGGCTC
TTTTGAGTATGAATATGCCATGCGCTGGAAGGCACTCATTGAGATGGAGAAGCAGCAGCAAGACCAAGTAGACCGTAACA
TCAAGGAGGCTCGCGAGAAGTTGGAGATGGAGATGGAGGCTGCTCGCCATGAGCACCAGGTCATGCTGATGAGGCAGGAT
TTGATGAGGCGCCAAGAAGAACTTCGGAGAATGGAAGAGTTGCACAACCAAGAAGTGCAAAAACGGAAGCAACTGGAGCT
CAGGCAGGAAGAGGAGCGCAGACGCCGTGAGGAAGAGATGCGACGGCAGCAGGAAGAAATGATGCGGCGACAGCAGGAAG
GATTCAAGGGAACCTTCCCTGATGCGAGAGAACAGGAGATACGGATGGGCCAGATGGCTATGGGAGGTGCTATGGGCATA
AACAACAGAGGTGCCATGCCCCCCGCTCCTGTGCCAGCTGGTACCCCAGCACCTCCAGGACCTGCCACTATGATGCCGGA
TGGAACCTTGGGATTGACCCCACCAACGACTGAACGTTTTGGCCAAGCTGCTACAATGGAAGGAATTGGGGCAATTGGTG
GAACTCCTCCTGCATTCAACCGTGCAGCTCCTGGAGCTGAATTTGCTCCAAACAAACGTCGCCGATACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 29 .67 RPM |
| SRP017611_kidney | 41 .66 RPM |
| SRP017611_brain | 42 .44 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016057 | ortholog_one2many | 2 retrogenes | |
| Bos taurus | ENSBTAG00000012152 | ortholog_one2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000017071 | ortholog_many2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000036744 | possible_ortholog | 1 retrogene | |
| Equus caballus | ENSECAG00000008502 | ortholog_one2many | 2 retrogenes | |
| Felis catus | ENSFCAG00000014807 | ortholog_one2many | 2 retrogenes | |
| Homo sapiens | ENSG00000147140 | possible_ortholog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000006194 | possible_ortholog | 1 retrogene | |
| Microcebus murinus | ENSMICG00000000232 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000002489 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000004937 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000031311 | possible_ortholog | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000001278 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000001877 | within_species_paralog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000004834 | possible_ortholog | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000020451 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000022010 | possible_ortholog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000016503 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000003689 | possible_ortholog | 2 retrogenes | |
| Sorex araneus | ENSSARG00000007959 | ortholog_one2many | 2 retrogenes | |
| Drosophila melanogaster | FBgn0004227 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_1317 | 60.80 | 50.42 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_1804 | 93.33 | 91.39 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000021848 retrocopies