Parental gene: | RAE1, ENSOPRG00000000228 |
| Aliases: | None |
| Description: | RAE1 RNA export 1 homolog (S. pombe) [Source:HGNC Symbol;Acc:9828] |
| Organism: | Southern American pika (Ochotona princeps) |
| Coordinates: | GeneScaffold_794:226300..237073(+) |
>ENSOPRG00000000228
ATGAGTTTGTTTGGAACGACCTCGGGCTTTGGAAGCAGCGGGACCAGCATGTTTGGCAGCACAACCACAGATAATCACAA
CCCCATGAAGGACATTGAAGTGACTTCTTCTCCGGATGACAGCATTGGCTGTCTGTCTTTCAGCCCGCCCACCTTACCAG
GGAACTTCCTCATCGCAGGGTCGTGGGCAAATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGGGAGCAAAGTGTTTACTGCATCTTGTGA
TAAAACTGCCAAGATGTGGGACCTTAACAGCAATCAGGCGATCCAGATCGCACAGCACGATGCTCCTGTTAAAACCATAC
ACTGGATCAAAGCCCCCAACTACAGCTGTGTGATGACTGGGAGCTGGGATAAGACTCTGAAGTTCTGGGACACCAGGTCG
TCAAACCCCATGATGGTTTTACAACTCCCTGAGAGGTGTTACTGTGCTGACGTGATATACCCGATGGCCGTGGTGGCGAC
AGCTGAGAGGGGCCTGATTGTCTATCAGTTGGAGAACCAGCCGTCTGAGTTCAGGAGGATAGAATCCCCACTGAAACATC
AGCATCGGTGTGTGGCTATTTTTAAAGACAAACAGAACAAGCCAACTGGATTTGCTCTCGGAAGTATTGAGGGGAGAGTT
GCTATTCACTACATCAATCCTCCAAATCCTGCCAAAGATAACTTCACCTTTAAATGCCATCGATCCAATGGGACCAACAC
TTCTGCCCCTCAAGACATCTATGCGGTCAACGGCATTGCCTTCCACCCCGTTCATGGCACCCTGGCCACTGTGGGATCTG
ATGGCCGCTTCAGCTTCTGGGACAAAGATGCCAGAACAAAACTCAAAACTTCAGAGCAGTTAGATCAGCCAATAGCAGCC
TGCTGCTTCAACCACAACGGGAACATATTTGCGTATGCCTCCAGCTACGACTGGTCCAAGGGACATGAGTTTTATAATCC
TCAAAAGAAAAATTACATTTTCCTGCGGAATGCAGCTGAAGAACTAAAGCCCAGGAATAAGAAGTAG
ATGAGTTTGTTTGGAACGACCTCGGGCTTTGGAAGCAGCGGGACCAGCATGTTTGGCAGCACAACCACAGATAATCACAA
CCCCATGAAGGACATTGAAGTGACTTCTTCTCCGGATGACAGCATTGGCTGTCTGTCTTTCAGCCCGCCCACCTTACCAG
GGAACTTCCTCATCGCAGGGTCGTGGGCAAATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGGGAGCAAAGTGTTTACTGCATCTTGTGA
TAAAACTGCCAAGATGTGGGACCTTAACAGCAATCAGGCGATCCAGATCGCACAGCACGATGCTCCTGTTAAAACCATAC
ACTGGATCAAAGCCCCCAACTACAGCTGTGTGATGACTGGGAGCTGGGATAAGACTCTGAAGTTCTGGGACACCAGGTCG
TCAAACCCCATGATGGTTTTACAACTCCCTGAGAGGTGTTACTGTGCTGACGTGATATACCCGATGGCCGTGGTGGCGAC
AGCTGAGAGGGGCCTGATTGTCTATCAGTTGGAGAACCAGCCGTCTGAGTTCAGGAGGATAGAATCCCCACTGAAACATC
AGCATCGGTGTGTGGCTATTTTTAAAGACAAACAGAACAAGCCAACTGGATTTGCTCTCGGAAGTATTGAGGGGAGAGTT
GCTATTCACTACATCAATCCTCCAAATCCTGCCAAAGATAACTTCACCTTTAAATGCCATCGATCCAATGGGACCAACAC
TTCTGCCCCTCAAGACATCTATGCGGTCAACGGCATTGCCTTCCACCCCGTTCATGGCACCCTGGCCACTGTGGGATCTG
ATGGCCGCTTCAGCTTCTGGGACAAAGATGCCAGAACAAAACTCAAAACTTCAGAGCAGTTAGATCAGCCAATAGCAGCC
TGCTGCTTCAACCACAACGGGAACATATTTGCGTATGCCTCCAGCTACGACTGGTCCAAGGGACATGAGTTTTATAATCC
TCAAAAGAAAAATTACATTTTCCTGCGGAATGCAGCTGAAGAACTAAAGCCCAGGAATAAGAAGTAG
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Oryctolagus cuniculus | ENSOCUG00000001585 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000014649 | ortholog_one2one | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000000550 | ortholog_one2many | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000002438 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_opri_1149 | 90.16 | 65.76 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOPRG00000000228 retrocopies