Parental gene: | RPS27A, ENSOPRG00000010469 |
| Aliases: | None |
| Description: | ribosomal protein S27a [Source:HGNC Symbol;Acc:10417] |
| Organism: | Southern American pika (Ochotona princeps) |
| Coordinates: | GeneScaffold_2670:41283..42916(+) |
>ENSOPRG00000010469
CAGATCTTCCAGACCCTTACGGGCAAGACCATCACCCTCGAGGTTGAGCCCTCGGATACGATAGAAAATGTAAAAGCCAA
AATCCAGGATAAGGAAGGAATTCCTCCGGATCAGCAAAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACTT
TATCTGACTACAACATTCAGAAGGAGTCCACGCTGCACCTGGTGCTCAGACTCCGTGGTGGTGCCAAGAAAAGGAAGAAG
AAGTCGTACACCACTCCCAAGAAGAACAAGCACAAGAGGAAGAAAGTTAAGCTGGCTGTCCTCAAGTACTACAAGGTGGA
TGAGAACGGTAAAATCAGCCGCCTGCGTCGCGAGTGCCCCTCTGACGAGTGCGGTGCCGGCGTGTTTATGGCCAGCCACT
TCGACAGGCACTACTGCGGCAAGTGCTGTCTGACCTACTGCTTCAACAAGCCTGAAGACAAGTAA
CAGATCTTCCAGACCCTTACGGGCAAGACCATCACCCTCGAGGTTGAGCCCTCGGATACGATAGAAAATGTAAAAGCCAA
AATCCAGGATAAGGAAGGAATTCCTCCGGATCAGCAAAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACTT
TATCTGACTACAACATTCAGAAGGAGTCCACGCTGCACCTGGTGCTCAGACTCCGTGGTGGTGCCAAGAAAAGGAAGAAG
AAGTCGTACACCACTCCCAAGAAGAACAAGCACAAGAGGAAGAAAGTTAAGCTGGCTGTCCTCAAGTACTACAAGGTGGA
TGAGAACGGTAAAATCAGCCGCCTGCGTCGCGAGTGCCCCTCTGACGAGTGCGGTGCCGGCGTGTTTATGGCCAGCCACT
TCGACAGGCACTACTGCGGCAAGTGCTGTCTGACCTACTGCTTCAACAAGCCTGAAGACAAGTAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000004017 | possible_ortholog | 5 retrogenes | |
| Canis familiaris | ENSCAFG00000023471 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000010052 | possible_ortholog | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000007678 | possible_ortholog | 9 retrogenes | |
| Loxodonta africana | ENSLAFG00000023133 | possible_ortholog | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000017064 | possible_ortholog | 10 retrogenes | |
| Myotis lucifugus | ENSMLUG00000029449 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000015563 | possible_ortholog | 8 retrogenes | |
| Monodelphis domestica | ENSMODG00000001819 | possible_ortholog | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000003613 | possible_ortholog | 10 retrogenes | |
| Pongo abelii | ENSPPYG00000025871 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000011928 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000004426 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000009566 | possible_ortholog | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_opri_71 | 54.81 | 85.06 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_opri_162 | 87.10 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_opri_177 | 86.18 | 78.57 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_opri_191 | 60.93 | 96.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_opri_331 | 91.45 | 75.32 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_opri_472 | 57.76 | 73.38 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_opri_490 | 54.81 | 85.06 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_opri_582 | 57.76 | 72.73 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_opri_717 | 87.10 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_opri_801 | 86.18 | 78.57 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_opri_871 | 60.93 | 96.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_opri_1056 | 67.57 | 71.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_opri_1120 | 91.45 | 75.32 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOPRG00000010469 retrocopies