RetrogeneDB ID: | retro_ocun_1209 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:117404181..117404525(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000003613 | ||
Aliases: | None | ||
Description: | Ubiquitin [Source:UniProtKB/Swiss-Prot;Acc:P62975] |
Percent Identity: | 51.24 % |
Parental protein coverage: | 76.92 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHK-RKKVKLA |
.EG.P.DQQRL.FAGKQ....R.L.....QK.STL.LVLR..GGAK.R.K.S..TP.K.....R.KV.LA | |
Retrocopy | EEGVPADQQRLTFAGKQRQ--RKLI*PQVQKASTLDLVLR-PGGAKERRKPS--TPAKQHKQ<RQKVLLA |
Parental | VLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK |
V.K........K.S.LRRECP..E.GAG.F...H..R...G.C.LT..F.K | |
Retrocopy | VPK*TIGGRE*KLSPLRRECPLSEWGAGAFVTGHWNRRHHGNCWLTS*FSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 147 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 235 .25 RPM |
SRP017611_liver | 0 .00 RPM | 62 .66 RPM |