RetrogeneDB ID: | retro_opri_71 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_180:38991..39374(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS27A | ||
Ensembl ID: | ENSOPRG00000010469 | ||
Aliases: | None | ||
Description: | ribosomal protein S27a [Source:HGNC Symbol;Acc:10417] |
Percent Identity: | 54.81 % |
Parental protein coverage: | 85.06 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | NVKAKIQDKE-GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKH |
N...K..D.E.G.P..Q...IFA.K.LE....LSDY.I.K...L.LVLRL...AK.R.K.S.TT..K..H | |
Retrocopy | NRNHKDKDPE*GKPTGQL*PIFASKLLESR*ALSDYSIIKNFSLDLVLRLHNSAKEREKSS-TTHEKSEH |
Parental | KRKK-VKLAVLKYYKVDENGK-ISRLRRECPSDECGAGVFMASHFDRHYCG-KCCLTYCFNKPED |
.RKK.VKL..LK...VDENGK.IS.L...C..DECGAG.F.A....R.YCG..CCLTYCFNK..D | |
Retrocopy | ARKK<VKLGCLKHHEVDENGK>ISFLHAQCCLDECGAGNFRAL---RQYCG<QCCLTYCFNKA*D |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004017 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000023471 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000010052 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000007678 | 9 retrocopies | |
Loxodonta africana | ENSLAFG00000023133 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000017064 | 10 retrocopies | |
Myotis lucifugus | ENSMLUG00000029449 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015563 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000001819 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003613 | 10 retrocopies | |
Ochotona princeps | ENSOPRG00000010469 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000025871 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011928 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004426 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000009566 | 5 retrocopies |