Parental gene:

ctdsp2, ENSPMAG00000009544

Aliases:None
Description:CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-184]
Organism:Lamprey (Petromyzon marinus)
Coordinates:GL477073:183018..188951(+)


>ENSPMAG00000009544
GTGAAGAAAAATCGAAACAAGAAAAGCCTGTTTGGCTCATTCTTCAGCTGCTTTCGCAAGTACGATGGCGAGCCTGCTGT
CCCCAAAAGCATTGCCATCGAGGCACCCAAGAAGGTGGAGGAGAATGGGGCCCTGCTCAAGAAGTGCCAAAGGTATTTAA
TGCCTATAGAAATTCCAGTGGAAAGGCCACTTTTACCAGAGCTAAGGCCCTTGGATGAAGGGAAGAAGTGTATGGTCATC
GATCTAGATGAGACCCTGGTGCACAGCTCTTTCAAGCCCATTGAAAATGCAGACTTCATAATTCCAGTAGAAATTGAGGG
AACAACACACCAGGTGTACGTGATGAAGAGACCTTTTGTGGACGAGTTCCTTCAGCGCATGGGAGAACTTTTTGAATGTG
TCCTCTTTACTGCTAGCCTAGCTAAGTATGCAGACCCAGTGGCTGACCTGCTGGATCGATGGGGAGTGTTCAGAGTTCGT
CTCTTTCGAGAATCCTGCGTCTTTCACCATGGCAGCTACGTAAAGGACTTGAGTCGGCTCGGCCGTGATCTCAGCCAGAC
CATCATCATCGACAACTCGCCAGCCTCTTACATATTCCACCCGGAAAATGCGGTGCCAGTGGGTTCATGGTTTGATGACA
TGTCCGACATGGAGCTGCTGGACCTCATCCCACTCTTTGAGGAGCTCGGTAAAACCGAGGACATCTTCACCATCCTGCAG
CGTCATCGGCAGAGGTAG

Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000005618 ortholog_one2one 1 retrogene
retro_chof_1918,
Callithrix jacchus ENSCJAG00000006503 ortholog_one2many 2 retrogenes
retro_cjac_3087, retro_cjac_919,
Homo sapiens ENSG00000175215 ortholog_one2one 2 retrogenes
retro_hsap_4315, retro_hsap_4319,
Macaca mulatta ENSMMUG00000005321 ortholog_one2one 2 retrogenes
retro_mmul_2208, retro_mmul_764,
Mus musculus ENSMUSG00000078429 ortholog_one2one 1 retrogene
retro_mmus_612,
Nomascus leucogenys ENSNLEG00000017164 ortholog_one2one 2 retrogenes
retro_nleu_1741, retro_nleu_3079,
Pongo abelii ENSPPYG00000004711 ortholog_one2one 14 retrogenes
retro_pabe_1708, retro_pabe_1739, retro_pabe_1740, retro_pabe_1742, retro_pabe_1746, retro_pabe_1762, retro_pabe_2402, retro_pabe_2592, retro_pabe_3202, retro_pabe_3205, retro_pabe_3221, retro_pabe_3237, retro_pabe_3554, retro_pabe_3578,
Pan troglodytes ENSPTRG00000005155 ortholog_one2one 7 retrogenes
retro_ptro_2587, retro_ptro_2589, retro_ptro_2590, retro_ptro_2592, retro_ptro_2594, retro_ptro_2958, retro_ptro_3054,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pmar_20 52.66 68.16
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_pmar_27 51.20 67.76
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPMAG00000009544 retrocopies