Parental gene:

Ctdsp2, ENSMUSG00000078429

Aliases:Ctdsp2, AI586070, D10Ertd73e, OS-4, OS4, SCP2
Description:CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 [Source:MGI Symbol;Acc:MGI:1098748]
Organism:Mouse (Mus musculus)
Coordinates:10:126978716..126999975(+)


>ENSMUSG00000078429
ATGGAACACGGCTCCATCATCACCCAGGCGCGGAGGGAAGACGCCCTGGTGCTCACCAAGCAAGGCCTAGTCTCCAAGTC
CTCGCCTAAGAAACCCCGTGGCCGCAGCATCTTCAAGGCCCTCTTGTGCTGTTTCCACACACAGCATGTTGTCCAGTCCA
GCTCTTCCACTGAGCTCACACACAAGGAGGAGGCCAACACCATCGCCAAGTCCGATCTCCTCCAGTGTCTCCAGTACCAG
TTTTATCAGATCCCTGGGACCTGCCTGCTCCCCGAGGTGACAGAGCAAGATCAAGGCAGGATCTGCGTGGTCATTGACCT
GGATGAGACCCTTGTGCACAGTTCCTTTAAGCCGATCAACAATGCTGACTTCATAGTGCCTGTAGAGATTGAGGGGACCA
CGCACCAGGTATATGTGCTCAAGAGGCCTTACGTCGATGAGTTCCTGAGACGGATGGGGGAGCTCTTCGAATGTGTTCTC
TTCACTGCCAGCTTGGCCAAGTATGCTGACCCTGTGACTGATCTCCTGGACCGGTGCGGGGTGTTCCGGGCCCGCCTGTT
CCGAGAGGCTTGTGTGTTCCACCAGGGCTGCTATGTCAAGGACCTCAGCCGCCTGGGAAGGGACCTGAGGAAAACTGTCA
TCCTGGACAACTCCCCTGCATCTTACATCTTCCACCCAGAAAATGCAGTGCCTGTGCAGTCCTGGTTTGATGACATGGCA
GATACAGAGTTGCTGAACCTGATTCCAGTCTTCGAGGAGCTAAGTGGAACTGATGATGTCTACACCAGCCTTGGGCAGCT
GCGGGCCCCTTAG

Library Parental gene expression (RPM)
SRP007412_brain 75 .98 RPM
SRP007412_cerebellum 113 .98 RPM
SRP007412_heart 113 .66 RPM
SRP007412_kidney 140 .71 RPM
SRP007412_liver 49 .05 RPM
SRP007412_testis 28 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000006503 ortholog_one2many 2 retrogenes
retro_cjac_3087, retro_cjac_919,
Homo sapiens ENSG00000175215 ortholog_one2one 2 retrogenes
retro_hsap_4315, retro_hsap_4319,
Macaca mulatta ENSMMUG00000005321 ortholog_one2one 2 retrogenes
retro_mmul_2208, retro_mmul_764,
Mus musculus ENSMUSG00000026176 within_species_paralog 2 retrogenes
retro_mmus_1069, retro_mmus_1156,
Nomascus leucogenys ENSNLEG00000017164 ortholog_one2one 2 retrogenes
retro_nleu_1741, retro_nleu_3079,
Petromyzon marinus ENSPMAG00000009544 ortholog_one2one 2 retrogenes
retro_pmar_20, retro_pmar_27,
Pongo abelii ENSPPYG00000004711 ortholog_one2one 14 retrogenes
retro_pabe_1708, retro_pabe_1739, retro_pabe_1740, retro_pabe_1742, retro_pabe_1746, retro_pabe_1762, retro_pabe_2402, retro_pabe_2592, retro_pabe_3202, retro_pabe_3205, retro_pabe_3221, retro_pabe_3237, retro_pabe_3554, retro_pabe_3578,
Pan troglodytes ENSPTRG00000005155 ortholog_one2one 7 retrogenes
retro_ptro_2587, retro_ptro_2589, retro_ptro_2590, retro_ptro_2592, retro_ptro_2594, retro_ptro_2958, retro_ptro_3054,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_612 99.63 100.00
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Download FASTA sequences of all ENSMUSG00000078429 retrocopies