Parental gene:

RNF2, ENSPPYG00000000417

Aliases:RNF2, RING1B
Description:E3 ubiquitin-protein ligase RING2 [Source:RefSeq peptide;Acc:NP_001127433]
Organism:Orangutan (Pongo abelii)
Coordinates:1:65491690..65551025(-)


>ENSPPYG00000000417
ATGTCTCAGGCTGTGCAGACAAACGGAACTCAACCATTATTCAAAACATGGGAACTCACTTTATATGACTTACAACGAAC
ACCTCAGGAGGCAATAACAGATGGCTTAGAAATTGTGGTTTCACCTCGAAGTCTACACAGTGAATTAATGTGCCCAATTT
GTTTGGATATGTTGAAGAACACCATGACTACAAAGGAGTGTTTACATCGTTTTTGTGCAGACTGCATCATCACAGCCCTT
AGAAGTGGCAACAAAGAATGTCCTACCTGTCGGAAAAAACTAGTTTCCAAAAGATCACTAAGGCCAGACCCAAACTTTGA
TGCACTCATCAGCAAAATTTATCCAAGTCGTGATGAGTATGAAGCTCATCAAGAGAGAGTATTAGCCAGGATCAACAAGC
ACAATAATCAGCAAGCACTCAGTCACAGCATTGAGGAAGGACTGAAGATACAGGCCATGAACAGACTGCAGCGAGGCAAG
AAACAACAGATTGAAAATGGTAGTGGAGCAGAAGATAATGGTGACAGTTCACACTGCAGTAATGCCTCCACACATAGCAA
TCAGGAAGCAGGCCCTAGTAACAAACGGACCAAAACATCTGATGATTCTGGGCTAGAGCTTGATAATAACAATGCAGCAA
TGGCAATTGATCCAGTAATGGATGGTGCTAGTGAAATTGAATTAGTATTCAGGCCTCATCCCACACTTATGGAAAAAGAT
GACAGTGCACAGACGAGATACATAAAGACTTCTGGTAACGCCACTGTTGATCACTTATCCAAGTATCTGGCTGTGAGGTT
AGCTTTAGAAGAACTTCGAAGCAAAGGTGAATCAAACCAGATGAACCTTGATACAGCCAGTGAGAAGCAGTATACCATTT
ATATAGCAACAGCCAGTGGCCAGTTCACTGTATTAAATGGCTCTTTTTCTTTGGAATTGGTCAGTGAGAAATACTGGAAA
GTGAACAAACCCATGGAACTTTACTACGCACCTACGAAGGAGCACAAATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 9 .73 RPM
SRP007412_cerebellum 7 .54 RPM
SRP007412_heart 4 .61 RPM
SRP007412_kidney 4 .31 RPM
SRP007412_liver 1 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000011199 ortholog_one2one 3 retrogenes
retro_chof_1450, retro_chof_2217, retro_chof_2251,
Callithrix jacchus ENSCJAG00000005442 ortholog_one2one 1 retrogene
retro_cjac_4198,
Erinaceus europaeus ENSEEUG00000014091 ortholog_one2one 1 retrogene
retro_eeur_88,
Echinops telfairi ENSETEG00000015824 ortholog_one2one 1 retrogene
retro_etel_2081,
Felis catus ENSFCAG00000009609 ortholog_one2one 1 retrogene
retro_fcat_1725,
Homo sapiens ENSG00000121481 ortholog_one2one 2 retrogenes
retro_hsap_4056, retro_hsap_4226,
Gorilla gorilla ENSGGOG00000014400 ortholog_one2one 1 retrogene
retro_ggor_2724,
Loxodonta africana ENSLAFG00000021357 ortholog_one2many 1 retrogene
retro_lafr_407,
Myotis lucifugus ENSMLUG00000001129 ortholog_one2one 1 retrogene
retro_mluc_2187,
Monodelphis domestica ENSMODG00000007422 ortholog_one2one 1 retrogene
retro_mdom_857,
Nomascus leucogenys ENSNLEG00000018029 ortholog_one2one 2 retrogenes
retro_nleu_1042, retro_nleu_554,
Oryctolagus cuniculus ENSOCUG00000004892 ortholog_one2many 1 retrogene
retro_ocun_838,
Pan troglodytes ENSPTRG00000001775 ortholog_one2one 2 retrogenes
retro_ptro_2749, retro_ptro_2871,
Ictidomys tridecemlineatus ENSSTOG00000006625 ortholog_one2one 3 retrogenes
retro_itri_1646, retro_itri_1794, retro_itri_410,
Tupaia belangeri ENSTBEG00000016387 ortholog_one2one 4 retrogenes
retro_tbel_1757, retro_tbel_3368, retro_tbel_3892, retro_tbel_4061,
Tarsius syrichta ENSTSYG00000006109 ortholog_one2one 6 retrogenes
retro_tsyr_1344, retro_tsyr_1647, retro_tsyr_2063, retro_tsyr_2083, retro_tsyr_227, retro_tsyr_474,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3331 68.93 52.68
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2. retro_pabe_3374 68.93 52.68
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Download FASTA sequences of all ENSPPYG00000000417 retrocopies