RetrogeneDB ID: | retro_hsap_4056 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 8:53887670..53888204(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000248911 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF2 | ||
Ensembl ID: | ENSG00000121481 | ||
Aliases: | RNF2, BAP-1, BAP1, DING, HIPI3, RING1B, RING2 | ||
Description: | ring finger protein 2 [Source:HGNC Symbol;Acc:10061] |
Percent Identity: | 70.22 % |
Parental protein coverage: | 52.68 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | FDALISKIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAED-NG |
FDALISKIYP.RDEYEA..ERVLA.I.KH.NQ.ALS.S.EEGLK.....RL..GKKQ..ENGS..E..N. | |
Retrocopy | FDALISKIYPRRDEYEALGERVLASIHKHSNQ*ALSLSFEEGLKAPVRSRL**GKKQ*TENGSREEEKNA |
Parental | DSSHCSNASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAMAIDPVMDGASEIELVFRPHPTLMEKDDSAQ |
D..HC..AST..N.E.G.S.K..KTS.DSGLELD..NA..AID..MDG.SEIELVFRP.PT.MEKDDSAQ | |
Retrocopy | DGLHCRDASTQNNKETGHSHKWNKTSADSGLELDIDNATFAIDSEMDGGSEIELVFRPQPTFMEKDDSAQ |
Parental | TRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMN |
.RYIKTSGNA.VDHLS.YL.VRLALEEL.S.G..NQMN | |
Retrocopy | IRYIKTSGNAAVDHLSSYLTVRLALEEL*SQGAQNQMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 34 .55 RPM |
bodymap2_adrenal | 0 .00 RPM | 26 .14 RPM |
bodymap2_brain | 0 .00 RPM | 16 .10 RPM |
bodymap2_breast | 0 .00 RPM | 24 .75 RPM |
bodymap2_colon | 0 .00 RPM | 23 .03 RPM |
bodymap2_heart | 0 .00 RPM | 10 .73 RPM |
bodymap2_kidney | 0 .00 RPM | 21 .09 RPM |
bodymap2_liver | 0 .00 RPM | 6 .19 RPM |
bodymap2_lung | 0 .00 RPM | 19 .48 RPM |
bodymap2_lymph_node | 0 .00 RPM | 27 .54 RPM |
bodymap2_ovary | 0 .00 RPM | 50 .58 RPM |
bodymap2_prostate | 0 .00 RPM | 25 .89 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 14 .10 RPM |
bodymap2_testis | 0 .00 RPM | 63 .16 RPM |
bodymap2_thyroid | 0 .00 RPM | 21 .43 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 47 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2749 |
Gorilla gorilla | retro_ggor_2724 |
Pongo abelii | retro_pabe_3331 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011199 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000005442 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000014091 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015824 | 1 retrocopy | |
Felis catus | ENSFCAG00000009609 | 1 retrocopy | |
Homo sapiens | ENSG00000121481 | 2 retrocopies |
retro_hsap_4056 , retro_hsap_4226,
|
Gorilla gorilla | ENSGGOG00000014400 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000021357 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001129 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007422 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000018029 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004892 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000417 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000001775 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006625 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000016387 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000006109 | 6 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |