RetrogeneDB ID: | retro_eeur_88 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_5494:91972..92515(-) | ||
Located in intron of: | ENSEEUG00000002428 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF2 | ||
Ensembl ID: | ENSEEUG00000014091 | ||
Aliases: | None | ||
Description: | ring finger protein 2 [Source:HGNC Symbol;Acc:10061] |
Percent Identity: | 89.5 % |
Parental protein coverage: | 53.57 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MSQAVQTNGTQ-PLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLH |
MSQ.VQTNGT..PLSKTWELSLYELQR.PQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECL. | |
Retrocopy | MSQEVQTNGTL*PLSKTWELSLYELQRRPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLY |
Parental | RFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQA |
RFCADCIITALRSGN.ECPTCRKKLVSKRSLRPDP.F.ALISKIYPS.DE.E.H.E.VLARINKHNN..A | |
Retrocopy | RFCADCIITALRSGNRECPTCRKKLVSKRSLRPDPHFAALISKIYPSCDENEVHREGVLARINKHNN*HA |
Parental | LSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS |
LSH..EEGLKIQAMNRLQ.GKKQQIENG.GAEDNGDSSHCS | |
Retrocopy | LSHNTEEGLKIQAMNRLQGGKKQQIENGRGAEDNGDSSHCS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 24 .82 RPM |
SRP017611_kidney | 0 .00 RPM | 13 .88 RPM |
SRP017611_liver | 0 .00 RPM | 6 .75 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011199 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000005442 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000014091 | 1 retrocopy |
retro_eeur_88 ,
|
Echinops telfairi | ENSETEG00000015824 | 1 retrocopy | |
Felis catus | ENSFCAG00000009609 | 1 retrocopy | |
Homo sapiens | ENSG00000121481 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000014400 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000021357 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001129 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007422 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000018029 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004892 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000417 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000001775 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006625 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000016387 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000006109 | 6 retrocopies |