RetrogeneDB ID: | retro_itri_410 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393289.1:21163335..21164164(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF2 | ||
Ensembl ID: | ENSSTOG00000006625 | ||
Aliases: | None | ||
Description: | ring finger protein 2 [Source:HGNC Symbol;Acc:10061] |
Percent Identity: | 85.82 % |
Parental protein coverage: | 82.74 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSEL-MCPICLDMLKNTMTTKECLH |
MSQAV.TNGTQPL.KT.ELSLYELQ.TPQEAITDGL.IVVSPRSLHSEL.MCPICLDMLKN.MTTKECLH | |
Retrocopy | MSQAVHTNGTQPLNKTRELSLYELQQTPQEAITDGLKIVVSPRSLHSEL<MCPICLDMLKNAMTTKECLH |
Parental | RFCADCIITALRSGNKECPTCRKKLVSKRSLRPD-PNFDALISKIYPSRDEYEAHQERVLARINKHNNQQ |
RFC.DCIITALRSG.K..PTC.K.LVSK.SLRPD.PNFDALISKIYPSRD.Y.AHQERVLARINKHNNQQ | |
Retrocopy | RFCTDCIITALRSGKK*SPTCWKELVSKISLRPD<PNFDALISKIYPSRDKYGAHQERVLARINKHNNQQ |
Parental | ALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDS--SHCSNASTHSNQEAGPSNKRTKTSDDSGLE |
.LS.S.EEGLKI..MNRLQ.GKKQ.IENGSGAEDNGDS..SHCSNA.THSNQEAGPSNK..KT.DDSGLE | |
Retrocopy | VLSLSTEEGLKIPDMNRLQ*GKKQ-IENGSGAEDNGDSDSSHCSNAFTHSNQEAGPSNKWIKTYDDSGLE |
Parental | LDNNNATVAIDPVIDGASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKG |
LDNNNAT.A.DPV..GASE.ELVFRPHP.LMEKDDSAQTRYIK.SGNATVDHLSKYL..RLAL.ELRSKG | |
Retrocopy | LDNNNATEATDPVMEGASETELVFRPHPSLMEKDDSAQTRYIKISGNATVDHLSKYL--RLALRELRSKG |
Parental | ES |
ES | |
Retrocopy | ES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011199 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000005442 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000014091 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015824 | 1 retrocopy | |
Felis catus | ENSFCAG00000009609 | 1 retrocopy | |
Homo sapiens | ENSG00000121481 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000014400 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000021357 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001129 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007422 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000018029 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004892 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000417 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000001775 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006625 | 3 retrocopies |
retro_itri_1646, retro_itri_1794, retro_itri_410 ,
|
Tupaia belangeri | ENSTBEG00000016387 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000006109 | 6 retrocopies |