Parental gene: | PAFAH1B1, ENSPPYG00000007796 |
| Aliases: | PAFAH1B1, LIS1, PAFAHA |
| Description: | platelet-activating factor acetylhydrolase IB subunit alpha [Source:RefSeq peptide;Acc:NP_001124853] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 17:2499851..2594263(+) |
>ENSPPYG00000007796
ATGGTGCTGTCCCAGAGACAACGAGATGAACTAAATCGAGCTATAGCAGATTATCTTCGTTCAAATGGCTATGAAGAGGC
ATATTCAGTTTTTAAAAAGGAAGCTGAATTAGATATGAATGAAGAATTAGATAAAAAGTATGCTGGTCTTTTGGAAAAAA
AATGGACATCTGTTATTAGATTACAAAAGAAGGTTATGGAATTAGAATCAAAGCTAAATGAAGCAAAAGAAGAATTTACG
TCAGGTGGACCTCTTGGTCAGAAACGAGACCCAAAAGAATGGATTCCCCGTCCGCCAGAAAAATACGCATTGAGTGGTCA
CAGGAGTCCAGTCACTCGAGTCATTTTCCATCCTGTGTTCAGTGTTATGGTCTCTGCTTCAGAGGATGCTACAATTAAGG
TGTGGGATTATGAGACTGGAGATTTTGAACGAACTCTTAAAGGACATACAGACTCTGTACAGGACATTTCATTCGACCAC
AGCGGCAAGCTTCTGGCTTCCTGTTCTGCAGATATGACCATTAAACTATGGGATTTTCAGGGCTTTGAATGCATCAGAAC
CATGCACGGCCATGACCACAATGTTTCTTCAGTAGCCATCATGCCCAATGGAGATCATATAGTGTCTGCCTCAAGGGATA
AAACTATAAAAATGTGGGAAGTGCAAACTGGCTACTGTGTGAAGACATTCACAGGACACAGAGAATGGGTACGTATGGTG
CGACCAAATCAAGATGGCACTCTGATAGCCAGCTGTTCCAATGACCAGACTGTGCGTGTATGGGTCGTAGCAACAAAGGA
ATGCAAGGCTGAGCTCCGAGAGCATGAACATGTGGTAGAATGCATTTCCTGGGCTCCGGAAAGCTCATATTCCTCCATCT
CTGAAGCAACAGGATCTGAGACTAAAAAAAGTGGTAAACCTGGGCCATTCTTGCTGTCTGGATCCAGAGACAAGACTATT
AAGATGTGGGATGTCAGTACTGGCATGTGCCTTATGACCCTCGTGGGTCATGATAACTGGGTACGTGGAGTTCTGTTCCA
TTCTGGGGGGAAGTTTATTTTGAGTTGTGCTGATGACAAGACCCTACGTGTATGGGATTACAAGAACAAGCGATGCATGA
AGACCCTCAATGCGCATGAACACTTTGTTACCTCCTTGGATTTCCACAAGACGGCACCCTATGTCGTCACTGGCAGCGTA
GATCAAACAGTAAAAGTGTGGGAGTGCCGTTGA
ATGGTGCTGTCCCAGAGACAACGAGATGAACTAAATCGAGCTATAGCAGATTATCTTCGTTCAAATGGCTATGAAGAGGC
ATATTCAGTTTTTAAAAAGGAAGCTGAATTAGATATGAATGAAGAATTAGATAAAAAGTATGCTGGTCTTTTGGAAAAAA
AATGGACATCTGTTATTAGATTACAAAAGAAGGTTATGGAATTAGAATCAAAGCTAAATGAAGCAAAAGAAGAATTTACG
TCAGGTGGACCTCTTGGTCAGAAACGAGACCCAAAAGAATGGATTCCCCGTCCGCCAGAAAAATACGCATTGAGTGGTCA
CAGGAGTCCAGTCACTCGAGTCATTTTCCATCCTGTGTTCAGTGTTATGGTCTCTGCTTCAGAGGATGCTACAATTAAGG
TGTGGGATTATGAGACTGGAGATTTTGAACGAACTCTTAAAGGACATACAGACTCTGTACAGGACATTTCATTCGACCAC
AGCGGCAAGCTTCTGGCTTCCTGTTCTGCAGATATGACCATTAAACTATGGGATTTTCAGGGCTTTGAATGCATCAGAAC
CATGCACGGCCATGACCACAATGTTTCTTCAGTAGCCATCATGCCCAATGGAGATCATATAGTGTCTGCCTCAAGGGATA
AAACTATAAAAATGTGGGAAGTGCAAACTGGCTACTGTGTGAAGACATTCACAGGACACAGAGAATGGGTACGTATGGTG
CGACCAAATCAAGATGGCACTCTGATAGCCAGCTGTTCCAATGACCAGACTGTGCGTGTATGGGTCGTAGCAACAAAGGA
ATGCAAGGCTGAGCTCCGAGAGCATGAACATGTGGTAGAATGCATTTCCTGGGCTCCGGAAAGCTCATATTCCTCCATCT
CTGAAGCAACAGGATCTGAGACTAAAAAAAGTGGTAAACCTGGGCCATTCTTGCTGTCTGGATCCAGAGACAAGACTATT
AAGATGTGGGATGTCAGTACTGGCATGTGCCTTATGACCCTCGTGGGTCATGATAACTGGGTACGTGGAGTTCTGTTCCA
TTCTGGGGGGAAGTTTATTTTGAGTTGTGCTGATGACAAGACCCTACGTGTATGGGATTACAAGAACAAGCGATGCATGA
AGACCCTCAATGCGCATGAACACTTTGTTACCTCCTTGGATTTCCACAAGACGGCACCCTATGTCGTCACTGGCAGCGTA
GATCAAACAGTAAAAGTGTGGGAGTGCCGTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 318 .97 RPM |
| SRP007412_cerebellum | 301 .21 RPM |
| SRP007412_heart | 86 .91 RPM |
| SRP007412_kidney | 94 .70 RPM |
| SRP007412_liver | 53 .83 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000007168 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000010776 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000020745 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000014001 | other_paralog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000019140 | within_species_paralog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000008551 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000002826 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1932 | 87.46 | 75.85 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000007796 retrocopies