Parental gene: | SPOPL, ENSPPYG00000012825 |
| Aliases: | None |
| Description: | speckle-type POZ protein-like [Source:HGNC Symbol;Acc:27934] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 2b:27548185..27571662(+) |
>ENSPPYG00000012825
ATGTCTCGGGAACCCACCCCACCTCTACCTGGAGATATGTCTACTGGTCCCATAGCAGAAAGCTGGTGTTACACACAGGT
TAAAGTAGTAAAATTTTCCTACATGTGGACCATTAATAACTTCAGTTTTTGTCGAGAAGAAATGGGTGAAGTGTTAAAAA
GTTCAACATTTTCATCTGGCCCAAGTGACAAAATGAAATGGTGCCTGAGGGTAAACCCAAAGGGATTAGATGATGAAAGT
AAAGACTACTTGTCCTTATATTTGCTTTTAGTCAGCTGCCCCAAAAGTGAAGTTCGAGCAAAATTCAAATTTTCCCTTCT
GAATGCTAAAAGGGAAGAAACAAAAGCAATGGAAAGCCAAAGAGCATATCGATTTGTGCAAGGGAAGGACTGGGGTTTTA
AAAAATTCATTAGAAGGGACTTTTTGCTTGATGAAGCTAATGGTCTTTTACCAGATGACAAGCTTACATTATTTTGTGAG
GTGAGTGTGGTCCAAGATTCAGTAAACATATCAGGACATACTAATACAAATACTTTGAAGGTGCCTGAGTGTCGTCTAGC
AGAAGATTTAGGTAATCTCTGGGAAAACACAAGATTTACAGACTGCAGTTTTTTCGTGAGAGGACAAGAATTTAAAGCTC
ATAAATCCGTGCTTGCAGCTCGATCTCCAGTTTTTAACGCCATGTTTGAACATGAAATGGAAGAAAGCAAAAAGAATCGA
GTGGAAATAAATGATTTAGACCCTGAAGTTTTTAAAGAAATGATGAGATTCATTTACACAGGGAGAGCACCAAACCTTGA
CAAAATGGCTGACAACTTGTTGGCAGCTGCAGACAAATATGCACTGGAACGGCTGAAGGTCATGTGCGAAGAAGCTTTGT
GTAGTAACCTCTCAGTAGAGAATGTTGCGGATACCCTTGTCCTTGCAGATTTGCACAGTGCAGAACAGTTGAAAGCACAA
GCCATAGACTTTATTAATAGGTGCAGTGTACTTCGACAACTTGGGTGTAAAGATGGGAAAAACTGGAACAGCAACCAAGC
AACCGACATAATGGAAACATCGGGGTGGAAGTCCATGATTCAGTCTCACCCTCATTTAGTAGCAGAAGCCTTTCGAGCAC
TAGCATCTGCACAGTGTCCACAGTTTGGCATTCCACGCAAACGGCTAAAACAGTCCTGA
ATGTCTCGGGAACCCACCCCACCTCTACCTGGAGATATGTCTACTGGTCCCATAGCAGAAAGCTGGTGTTACACACAGGT
TAAAGTAGTAAAATTTTCCTACATGTGGACCATTAATAACTTCAGTTTTTGTCGAGAAGAAATGGGTGAAGTGTTAAAAA
GTTCAACATTTTCATCTGGCCCAAGTGACAAAATGAAATGGTGCCTGAGGGTAAACCCAAAGGGATTAGATGATGAAAGT
AAAGACTACTTGTCCTTATATTTGCTTTTAGTCAGCTGCCCCAAAAGTGAAGTTCGAGCAAAATTCAAATTTTCCCTTCT
GAATGCTAAAAGGGAAGAAACAAAAGCAATGGAAAGCCAAAGAGCATATCGATTTGTGCAAGGGAAGGACTGGGGTTTTA
AAAAATTCATTAGAAGGGACTTTTTGCTTGATGAAGCTAATGGTCTTTTACCAGATGACAAGCTTACATTATTTTGTGAG
GTGAGTGTGGTCCAAGATTCAGTAAACATATCAGGACATACTAATACAAATACTTTGAAGGTGCCTGAGTGTCGTCTAGC
AGAAGATTTAGGTAATCTCTGGGAAAACACAAGATTTACAGACTGCAGTTTTTTCGTGAGAGGACAAGAATTTAAAGCTC
ATAAATCCGTGCTTGCAGCTCGATCTCCAGTTTTTAACGCCATGTTTGAACATGAAATGGAAGAAAGCAAAAAGAATCGA
GTGGAAATAAATGATTTAGACCCTGAAGTTTTTAAAGAAATGATGAGATTCATTTACACAGGGAGAGCACCAAACCTTGA
CAAAATGGCTGACAACTTGTTGGCAGCTGCAGACAAATATGCACTGGAACGGCTGAAGGTCATGTGCGAAGAAGCTTTGT
GTAGTAACCTCTCAGTAGAGAATGTTGCGGATACCCTTGTCCTTGCAGATTTGCACAGTGCAGAACAGTTGAAAGCACAA
GCCATAGACTTTATTAATAGGTGCAGTGTACTTCGACAACTTGGGTGTAAAGATGGGAAAAACTGGAACAGCAACCAAGC
AACCGACATAATGGAAACATCGGGGTGGAAGTCCATGATTCAGTCTCACCCTCATTTAGTAGCAGAAGCCTTTCGAGCAC
TAGCATCTGCACAGTGTCCACAGTTTGGCATTCCACGCAAACGGCTAAAACAGTCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 12 .00 RPM |
| SRP007412_cerebellum | 22 .74 RPM |
| SRP007412_heart | 7 .29 RPM |
| SRP007412_kidney | 13 .39 RPM |
| SRP007412_liver | 7 .59 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000014763 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000144228 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000016285 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000002560 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013800 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000006944 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000012504 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_2438 | 80.77 | 65.31 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2439 | 76.63 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2440 | 79.25 | 59.95 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_2599 | 82.35 | 51.53 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000012825 retrocopies