Parental gene: | SPOPL, ENSPTRG00000012504 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 2B:142508832..142580232(+) |
>ENSPTRG00000012504
ATGTCTCGGGAACCCACCCCACCTCTACCTGGAGATATGTCTACTGGTCCCATAGCAGAAAGCTGGTGTTACACACAGGT
TAAAGTAGTAAAATTTTCCTATATGTGGACCATTAATAACTTCAGTTTTTGTCGAGAGGAAATGGGTGAAGTGTTAAAAA
GTTCAACATTTTCATCTGGCCCAAGTGACAAAATGAAATGGTGCCTGAGGGTAAACCCAAAGGGATTAGATGATGAAAGT
AAAGACTACTTGTCCTTATATTTGCTTTTAGTCAGCTGCCCCAAAAGTGAAGTTCGAGCAAAATTCAAATTTTCCCTTCT
GAATGCTAAAAGGGAAGAAACAAAAGCAATGGAAAGCCAAAGAGCATATCGATTTGTGCAAGGGAAGGACTGGGGTTTTA
AAAAATTCATTAGAAGGGACTTTTTGCTTGATGAAGCTAATGGTCTTTTACCAGATGACAAGCTTACATTATTTTGTGAG
GTGAGTGTGGTCCAAGATTCAGTAAACATATCAGGACATACTAATACAAATACTTTGAAGGTGCCTGAGTGTCGTCTAGC
AGAAGATTTAGGTAATCTCTGGGAAAACACAAGATTTACAGACTGCAGTTTTTTCGTGAGAGGACAAGAATTTAAAGCTC
ATAAATCTGTGCTTGCAGCTCGATCTCCGGTTTTTAACGCCATGTTTGAACATGAAATGGAAGAAAGCAAAAAGAATCGA
GTGGAAATAAATGATTTAGACCCTGAAGTTTTTAAAGAAATGATGAGATTCATTTACACAGGGAGAGCACCAAACCTTGA
CAAAATGGCTGACAACTTGTTGGCAGCTGCAGACAAATATGCACTGGAACGGCTGAAGGTCATGTGCGAAGAAGCTTTGT
GTAGTAACCTCTCAGTAGAGAATGTTGCAGATACCCTTGTCCTTGCAGATTTGCACAGTGCAGAACAGTTGAAAGCACAA
GCCATAGACTTTATTAATAGGTGCAGTGTACTTCGACAACTTGGGTGTAAAGATGGGAAAAACTGGAACAGCAACCAAGC
AACCGACATAATGGAAACATCAGGGTGGAAGTCCATGATTCAGTCTCACCCTCATTTAGTAGCAGAAGCCTTTCGAGCAC
TAGCATCTGCACAGTGTCCACAGTTTGGCATTCCACGCAAACGGCTAAAACAGTCCTGA
ATGTCTCGGGAACCCACCCCACCTCTACCTGGAGATATGTCTACTGGTCCCATAGCAGAAAGCTGGTGTTACACACAGGT
TAAAGTAGTAAAATTTTCCTATATGTGGACCATTAATAACTTCAGTTTTTGTCGAGAGGAAATGGGTGAAGTGTTAAAAA
GTTCAACATTTTCATCTGGCCCAAGTGACAAAATGAAATGGTGCCTGAGGGTAAACCCAAAGGGATTAGATGATGAAAGT
AAAGACTACTTGTCCTTATATTTGCTTTTAGTCAGCTGCCCCAAAAGTGAAGTTCGAGCAAAATTCAAATTTTCCCTTCT
GAATGCTAAAAGGGAAGAAACAAAAGCAATGGAAAGCCAAAGAGCATATCGATTTGTGCAAGGGAAGGACTGGGGTTTTA
AAAAATTCATTAGAAGGGACTTTTTGCTTGATGAAGCTAATGGTCTTTTACCAGATGACAAGCTTACATTATTTTGTGAG
GTGAGTGTGGTCCAAGATTCAGTAAACATATCAGGACATACTAATACAAATACTTTGAAGGTGCCTGAGTGTCGTCTAGC
AGAAGATTTAGGTAATCTCTGGGAAAACACAAGATTTACAGACTGCAGTTTTTTCGTGAGAGGACAAGAATTTAAAGCTC
ATAAATCTGTGCTTGCAGCTCGATCTCCGGTTTTTAACGCCATGTTTGAACATGAAATGGAAGAAAGCAAAAAGAATCGA
GTGGAAATAAATGATTTAGACCCTGAAGTTTTTAAAGAAATGATGAGATTCATTTACACAGGGAGAGCACCAAACCTTGA
CAAAATGGCTGACAACTTGTTGGCAGCTGCAGACAAATATGCACTGGAACGGCTGAAGGTCATGTGCGAAGAAGCTTTGT
GTAGTAACCTCTCAGTAGAGAATGTTGCAGATACCCTTGTCCTTGCAGATTTGCACAGTGCAGAACAGTTGAAAGCACAA
GCCATAGACTTTATTAATAGGTGCAGTGTACTTCGACAACTTGGGTGTAAAGATGGGAAAAACTGGAACAGCAACCAAGC
AACCGACATAATGGAAACATCAGGGTGGAAGTCCATGATTCAGTCTCACCCTCATTTAGTAGCAGAAGCCTTTCGAGCAC
TAGCATCTGCACAGTGTCCACAGTTTGGCATTCCACGCAAACGGCTAAAACAGTCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 11 .51 RPM |
| SRP007412_cerebellum | 14 .02 RPM |
| SRP007412_heart | 16 .03 RPM |
| SRP007412_kidney | 23 .51 RPM |
| SRP007412_liver | 9 .56 RPM |
| SRP007412_testis | 9 .91 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000014763 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000144228 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000016285 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000002560 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013800 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000006944 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000012825 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1991 | 81.99 | 65.82 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2054 | 79.36 | 55.10 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000012504 retrocopies