Parental gene:

LETM1, ENSPPYG00000014533

Aliases:None
Description:leucine zipper-EF-hand containing transmembrane protein 1 [Source:HGNC Symbol;Acc:6556]
Organism:Orangutan (Pongo abelii)
Coordinates:4:1808706..1848384(-)


>ENSPPYG00000014533
ATGGCGTCCATCTTACTGAGGAGCTGCCGCGGCCGGGCGCCGGCCCGTCTCCCGCCGCCGCCTCGGGTCACCGTCCCGCG
GGGTAGTCCGGGGGATCCGGCTCATCTCAGCTGTGCCAACACCCTGGGGTTGAGGAGCTGCCTGAATGTTCCATTTGGCT
GCTGCACTCCCATCCACCCTGTGTACCCATCCTCCAGAGGCGATCACCTTGGCTGTTGGACTCTGAGGCCCGAGTGCCTT
CGCACGGTGTCGAGAGCGCCATGGACCTCTACCTCTGTGGGTTTTGTGGCTGTGGGACCTCAGTGCCTTCCTGTGCGTGG
CTGGCACTCTTCGCGCCCTGTTCGCGATGACTCGGTAGTAGAGAAGTCCCTCAAGTCCTTGAAGGACAAGAACAAGAAGC
TGGAGGAAGGCGGCCCGGTGTACAGCCCCCCCGCAGCGGTGGTGGTGAAGAAGCCTCTGGGGCAGAGGGTGCTGGACGAG
CTGAAGCACTACTACCACGGCTTCCGCCTGCTGTGGATTGACGCCAAGATCGCCGCACGCACGCTCTGGCGCATCCTCAA
TGGCCACACCCTCACCCGCCGGGAGCGCAGGCAGTTTCTCCGGATCTGCGCTGACCTCTTCCGCCTGGTGCCATTCCTTG
TGTTCGTGGTGGTGCCGTTCATGGAGTTTCTGCTGCCTGTTGCTGTGAAGCTCTTCCCCAACATGTTGCCATCCACATTT
GAGACTCAGTCACTCAAGGAGGAGAGGCTGAAGAAGGAGCTTCGGGTCAAGCTGGAGCTGGCCAAGTTCCTCCAGGACAC
CATCGAGGAGATGGCCTTGAAGAACAAGGCAGCCAAGGGCAGCGCCACCAAAGACTTCTCTGTGTTTTTCCAGAAGATCC
GGGAGACAGGGGAGAGGCCCAGCAATGAGGAAATCATGCGTTTTTCCAAATTATTTGAGGATGAGCTGACCCTGGACAAC
CTGACACGGCCGCAGCTGGTGGCCCTGTGCAAGCTGCTGGAGCTACAGTCCATCGGCACCAACAACTTCCTGCGCTTCCA
GCTTACCATGCGGCTGCGCTCCATAAAGGCAGACGACAAGCTGATTGCTGAGGAAGGGGTGGACAGCCTGAGCGTCAAGG
AGCTGCAGGCAGCATGTCGGGCACGAGGCATGCGGGCCCTGGGCGTCACGGAAGACCGCCTGAGGGGTCAGCTGAAGCAG
TGGCTGGACCTGCACTTGCATCAGGAGATCCCCACATCGCTGCTCATCCTGTCCCGGGCCATGTACCTCCCGGACACCCT
CTCTCCAGCTGACCAGCTCAAGTCCACACTGCAGACCCTCCCAGAGATTGTGGCAAAGGAAGCGCAGGTAAAAGCGGCCG
AGGTGGAGGGCGAGCAGGTGGACAACAAGGCCAAGCTGGAGGCCACGCTGCAGGAGGAGGCGGCCATCCAGCAGGAACAC
CGTGAGAAGGAGCTGCAGAAGCGCTCAGAGGCGGCGAAGGATGTTGAGCCCGAACGTGTGGTAGCTGCTCCCCAAAGGCC
AGGAACCGAGCCACAGCCAGAAATGCCTGACACAGTCCTGCAGTCAGAGACCTTGAAGGACACTGCCCCCGTGCTGGAGG
GCTTGAAGGAGGAAGAGATCACGAAGGAGGAAATCGACATCCTCAGCGATGCCTGCTCTAAGCTGCAGGAGCAGAAGAAG
TCACTCACCAAGGAGAAGGAGGAGCTGGAGCTGCTGAAGGAGGACGTGCAGGACTACAGCGAGGACTTGCAGGAGATTAA
GAAGGAACTTTCAAAGACTGGTGAAGAAAAATACGTGGAAGAATCTAAAGCCAGCAAGAGATTGACAAAAAGGGTGCAGC
AGATGATCGGGCAGATCGATGGCTTGATCTCGCAGCTGGAGATGGACCAGCAGGCTGGCAAGCTGGCCCCGGCCAACGGC
ATGCCCACAGGGGAGAACATCATCAGTGTTGCTGAGCTCATCAACGCCATGAAGCAAGTCAAGCACATTCCCGAAAGCAA
GCTCACCAGCCTGGCCGCAGCACTGGATGAAAACAAGGACGGCAAGGTCAACATCAATGACCTCGTCAAGGTGATTGAGC
TGGTGGACAAAGAAGATGTTCACATCTCCACCAGCCAGGTGGCTGAGATTGTAGCAACACTGGAAAAAGAGGAGAAGGTG
GAGGAGAAGGAGAAGGCCAAAGAGAAGGCAGAGAAGGAGGTCGCAGAGGTGAAGAGCTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 34 .17 RPM
SRP007412_cerebellum 25 .05 RPM
SRP007412_heart 8 .46 RPM
SRP007412_kidney 18 .46 RPM
SRP007412_liver 9 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000001859 ortholog_one2one 1 retrogene
retro_cjac_1529,
Homo sapiens ENSG00000168924 ortholog_one2one 1 retrogene
retro_hsap_2019,
Gorilla gorilla ENSGGOG00000002923 ortholog_one2one 2 retrogenes
retro_ggor_1158, retro_ggor_1159,
Nomascus leucogenys ENSNLEG00000000067 ortholog_one2one 2 retrogenes
retro_nleu_1752, retro_nleu_2731,
Otolemur garnettii ENSOGAG00000014883 ortholog_one2one 1 retrogene
retro_ogar_20,
Ictidomys tridecemlineatus ENSSTOG00000014167 ortholog_one2one 1 retrogene
retro_itri_160,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1655 83.00 53.86
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Download FASTA sequences of all ENSPPYG00000014533 retrocopies