Parental gene:

GM2A, ENSPPYG00000015962

Aliases:None
Description:GM2 ganglioside activator [Source:HGNC Symbol;Acc:4367]
Organism:Orangutan (Pongo abelii)
Coordinates:5:153296852..153314197(+)


>ENSPPYG00000015962
ATGCAGTCCGTGATGCAGGCTCCCCTCCTGATCGCCCTGGGCTTGCTTCTTGCGGCCCCTGCGCAAGCCCACCTGAAAAA
GCTCAGTAGCTTTTCCTGGGATAACTGTGATGAAGGGAAGGACCCTGCAGTGATCAGAAGCCTGACTCTGGAGCCTGACC
CCATCATCGTTCCTGGGAATGTGACCCTCAGTGTCATGGGCAGCACCAGTGTTCCCCTGAGTTCTCCTCTGAAGGTGGAT
TTAGTTTTGGAGAAGGAAGTGGCTGGCCTCTGGATCAAGATCCCATGCACGGACTACATTGGCAGCTGTACCTTTGAACA
ATTCTGTGATGTGCTTGACATGTTAATTCCTACTGGGGAGCCCTGCCCAGAGCCCCTGCGTACCTATGGGCTTCCTTGCC
ACTGTCCCTTCAAAGAAGGAACCTACTCACTGCCCAAGAGCGAATTCGTTGTGCCTGACCTGGAGCTGCCCAGTTGGCTC
ACCACCGGGAACTACCGCATAGAGAGCGTCCTGAGCAGCAGTGGGAAGCATCTGGGCTGCATCAAGATCGCTGCCTCTCT
AAAGGGCATATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 24 .16 RPM
SRP007412_cerebellum 36 .12 RPM
SRP007412_heart 12 .94 RPM
SRP007412_kidney 34 .70 RPM
SRP007412_liver 20 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Equus caballus ENSECAG00000020587 ortholog_one2one 1 retrogene
retro_ecab_510,
Homo sapiens ENSG00000196743 ortholog_one2one 2 retrogenes
retro_hsap_264, retro_hsap_2715,
Gorilla gorilla ENSGGOG00000015302 ortholog_one2one 2 retrogenes
retro_ggor_1891, retro_ggor_313,
Macropus eugenii ENSMEUG00000010421 ortholog_one2one 1 retrogene
retro_meug_1818,
Microcebus murinus ENSMICG00000000690 ortholog_one2one 1 retrogene
retro_mmur_518,
Myotis lucifugus ENSMLUG00000003215 ortholog_one2one 1 retrogene
retro_mluc_920,
Macaca mulatta ENSMMUG00000022869 ortholog_one2one 1 retrogene
retro_mmul_454,
Nomascus leucogenys ENSNLEG00000010966 ortholog_one2one 1 retrogene
retro_nleu_866,
Oryctolagus cuniculus ENSOCUG00000015837 ortholog_one2many 1 retrogene
retro_ocun_704,
Ochotona princeps ENSOPRG00000006171 ortholog_one2one 1 retrogene
retro_opri_1169,
Pan troglodytes ENSPTRG00000017431 ortholog_one2one 2 retrogenes
retro_ptro_1834, retro_ptro_221,
Ictidomys tridecemlineatus ENSSTOG00000028500 ortholog_one2one 1 retrogene
retro_itri_759,
Tursiops truncatus ENSTTRG00000000503 ortholog_one2one 1 retrogene
retro_ttru_488,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_403 63.27 75.26
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Download FASTA sequences of all ENSPPYG00000015962 retrocopies