RetrogeneDB ID: | retro_ecab_510 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 2:13006808..13007382(-) | ||
Located in intron of: | ENSECAG00000017621 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GM2A | ||
Ensembl ID: | ENSECAG00000020587 | ||
Aliases: | None | ||
Description: | ganglioside GM2 activator [Source:RefSeq peptide;Acc:NP_001075381] |
Percent Identity: | 77.04 % |
Parental protein coverage: | 99.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | RPSMQAPFLIALGLLLAGPAAPVSVLSE-RLRSFSW-DNCDEGKDPMVLKSLTLEPDPIAVPGNVTVSAE |
RPSMQAPFLIA.GLLLAGPAAPVS.L....L..FSW..NCDEGKDP.V.K.LT.EPDPIAVPGNVTVSAE | |
Retrocopy | RPSMQAPFLIAVGLLLAGPAAPVSILLD<QLSRFSW<GNCDEGKDPVVIKTLTVEPDPIAVPGNVTVSAE |
Parental | VKTTVALSAPQKVELTVEKEVAGVWVKIPCVDQIGSCTFDNACDILDA-LTPPGQPCPEPLHTFGLPCHC |
VKTTV...APQKVE.T..KEVA.VWVKIPC..QIGSCTFDNA.D.LD...TPPGQ.CPEPLHT.GLPC.C | |
Retrocopy | VKTTVPFIAPQKVEITLDKEVASVWVKIPCMEQIGSCTFDNAYDMLDT>KTPPGQSCPEPLHTYGLPCRC |
Parental | PFKEGTYSLPKST-FPLPDLELPSWLSNGNYRVQSILSSGGKRLGCVKITASLKAK |
PFKE.TYSLPKST.FPLP.LELPSWL.N.NYR.QS.LS..G.RLGC.KI..SLK.K | |
Retrocopy | PFKEATYSLPKST<FPLPNLELPSWLNNRNYRIQSVLSGSGTRLGCIKISTSLKGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 11 .16 RPM |
SRP021940_cerebellum | 0 .05 RPM | 23 .47 RPM |
SRP021940_embryo | 0 .03 RPM | 11 .15 RPM |
SRP021940_placental_villous | 0 .34 RPM | 3507 .01 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 27 .89 RPM |
SRP021940_testis | 0 .00 RPM | 48 .21 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000020587 | 1 retrocopy |
retro_ecab_510 ,
|
Homo sapiens | ENSG00000196743 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000015302 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000010421 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000690 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003215 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022869 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010966 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015837 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000006171 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015962 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017431 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000028500 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000503 | 1 retrocopy |