Parental gene: | TUBB, ENSPPYG00000016419 |
| Aliases: | TUBB2A, TUBB, TUBB5 |
| Description: | Tubulin beta chain [Source:UniProtKB/Swiss-Prot;Acc:Q5R943] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 6:31439885..31444981(+) |
>ENSPPYG00000016419
ATGAGGGAAATCGTGCACATCCAGGCTGGTCAGTGTGGCAACCAGATCGGTGCCAAGTTCTGGGAGGTGATCAGTGATGA
ACATGGCATCGACCCCACCGGCACCTACCACGGGGACAGCGACCTGCAGCTGGACCGCATCTCTGTGTACTACAATGAAG
CCACAGGTGGCAAATATGTTCCTCGTGCCATCCTGGTGGATCTAGAACCTGGGACCATGGACTCTGTTCGCTCAGGTCCT
TTTGGCCAGATCTTTAGACCAGACAACTTTGTATTTGGTCAGTCTGGGGCAGGTAACAACTGGGCCAAAGGCCACTACAC
AGAGGGCGCCGAGCTGGTTGATTCTGTCCTGGATGTCGTACGGAAGGAGGCAGAGAGCTGTGACTGCCTGCAGGGCTTCC
AGCTGACCCACTCACTGGGCGGGGGCACAGGCTCTGGAATGGGCACTCTCCTTATCAGCAAGATCCGAGAAGAATACCCT
GATCGCATCATGAATACCTTCAGTGTGGTGCCTTCACCCAAAGTGTCTGACACCGTGGTCGAGCCCTACAATGCCACCCT
CTCCGTCCATCAGTTGGTAGAGAACACTGATGAGACCTATTGCATTGACAACGAGGCCCTCTATGATATCTGCTTCCGCA
CTCTGAAGCTGACCACACCAACCTACGGGGATCTGAACCACCTCGTCTCAGCCACCATGAGCGGTGTCACCACCTGCCTC
CGTTTCCCTGGCCAGCTCAATGCTGACCTCCGCAAGTTGGCAGTCAACATGGTCCCCTTCCCACGTCTCCATTTCTTTAT
GCCTGGCTTTGCCCCTCTCACCAGCCGTGGAAGCCAGCAGTATCGAGCTCTCACAGTGCCGGAACTCACCCAGCAGGTCT
TCGATGCCAAGAACATGATGGCTGCCTGTGACCCCCGCCACGGCCGATACCTCACCGTGGCTGCTGTCTTCCGTGGTCGG
ATGTCCATGAAGGAGGTCGATGAGCAGATGCTTAACGTGCAGAACAAGAACAGCAGCTACTTTGTGGAATGGATCCCCAA
CAATGTCAAGACAGCCGTCTGTGACATCCCACCTCGTGGCCTCAAGATGGCAGTCACCTTCATTGGCAATAGCACAGCCA
TCCAGGAGCTCTTCAAGCGCATCTCGGAGCAGTTCACTGCCATGTTCCGCCGGAAGGCCTTCCTCCACTGGTACACAGGC
GAGGGCATGGACGAGATGGAGTTCACCGAGGCTGAGAGCAACATGAACGACCTCGTCTCTGAGTATCAGCAGTACCAGGA
TGCCACTGCAGAAGAGGAGGAGGATTTCGGTGAGGAGGCCGAAGAGGAGGCCTAA
ATGAGGGAAATCGTGCACATCCAGGCTGGTCAGTGTGGCAACCAGATCGGTGCCAAGTTCTGGGAGGTGATCAGTGATGA
ACATGGCATCGACCCCACCGGCACCTACCACGGGGACAGCGACCTGCAGCTGGACCGCATCTCTGTGTACTACAATGAAG
CCACAGGTGGCAAATATGTTCCTCGTGCCATCCTGGTGGATCTAGAACCTGGGACCATGGACTCTGTTCGCTCAGGTCCT
TTTGGCCAGATCTTTAGACCAGACAACTTTGTATTTGGTCAGTCTGGGGCAGGTAACAACTGGGCCAAAGGCCACTACAC
AGAGGGCGCCGAGCTGGTTGATTCTGTCCTGGATGTCGTACGGAAGGAGGCAGAGAGCTGTGACTGCCTGCAGGGCTTCC
AGCTGACCCACTCACTGGGCGGGGGCACAGGCTCTGGAATGGGCACTCTCCTTATCAGCAAGATCCGAGAAGAATACCCT
GATCGCATCATGAATACCTTCAGTGTGGTGCCTTCACCCAAAGTGTCTGACACCGTGGTCGAGCCCTACAATGCCACCCT
CTCCGTCCATCAGTTGGTAGAGAACACTGATGAGACCTATTGCATTGACAACGAGGCCCTCTATGATATCTGCTTCCGCA
CTCTGAAGCTGACCACACCAACCTACGGGGATCTGAACCACCTCGTCTCAGCCACCATGAGCGGTGTCACCACCTGCCTC
CGTTTCCCTGGCCAGCTCAATGCTGACCTCCGCAAGTTGGCAGTCAACATGGTCCCCTTCCCACGTCTCCATTTCTTTAT
GCCTGGCTTTGCCCCTCTCACCAGCCGTGGAAGCCAGCAGTATCGAGCTCTCACAGTGCCGGAACTCACCCAGCAGGTCT
TCGATGCCAAGAACATGATGGCTGCCTGTGACCCCCGCCACGGCCGATACCTCACCGTGGCTGCTGTCTTCCGTGGTCGG
ATGTCCATGAAGGAGGTCGATGAGCAGATGCTTAACGTGCAGAACAAGAACAGCAGCTACTTTGTGGAATGGATCCCCAA
CAATGTCAAGACAGCCGTCTGTGACATCCCACCTCGTGGCCTCAAGATGGCAGTCACCTTCATTGGCAATAGCACAGCCA
TCCAGGAGCTCTTCAAGCGCATCTCGGAGCAGTTCACTGCCATGTTCCGCCGGAAGGCCTTCCTCCACTGGTACACAGGC
GAGGGCATGGACGAGATGGAGTTCACCGAGGCTGAGAGCAACATGAACGACCTCGTCTCTGAGTATCAGCAGTACCAGGA
TGCCACTGCAGAAGAGGAGGAGGATTTCGGTGAGGAGGCCGAAGAGGAGGCCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 297 .35 RPM |
| SRP007412_cerebellum | 155 .53 RPM |
| SRP007412_heart | 108 .46 RPM |
| SRP007412_kidney | 127 .75 RPM |
| SRP007412_liver | 135 .81 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000006969 | possible_ortholog | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000000443 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000023684 | possible_ortholog | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005348 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000032213 | possible_ortholog | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000014770 | possible_ortholog | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000011180 | other_paralog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_467 | 80.07 | 67.57 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2920 | 70.91 | 86.26 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_3210 | 79.33 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_3698 | 86.97 | 99.77 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000016419 retrocopies